Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01953 ATGCCGCCAAAGTTTGATCCTACCCAGGTGGTGGATGTGTACGTCCGAGTCACCGGTGGAGAGGTCGGCGCGGCAAGTTCACTCGCTCCAAAGATCGGTCCATTGGGTCTTTCCCCAAAGAAGATCGGTGAAGACATAGCCAAAGAAACAGCAAAAGATTGGAAGGGTCTCCGAGTGACGGTGAAGCTCACCGTCCAGAACCGGCAAGCCAAGGTTGCGGTGGTACCTTCCGCTGCTGCGTTGGTAATCAAGGCCCTGAAGGAGCCCGAAAGAGACCGGAAGAAGACAAAGAACATTAAGCACAATGGAAATATCTCACTTGACGATGTGATCGAGATCGCCAAAGTGATGAGCCCCAGATCCATGGCCAAGGACTTGTCTGGAACTGTTAAGGAGATACTCGGCACGTGCGTCTCTGTTGGGTGTACGGTCGATGGGAAGAACCCCAAGGACCTGCAGCAGGAGATAACTGACGGGGACGTCGAAATTCCTCAAGATTA 500 0.53 MPPKFDPTQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMSPRSMAKDLSGTVKEILGTCVSVGCTVDGKNPKDLQQEITDGDVEIPQD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01953 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva13g01953 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva13g01953 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Bva13g01953 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Bva13g01953 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Bva13g01953 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 - -
Bva13g01953 166 Gene3D - 1 81 IPR036796 -
Bva13g01953 166 Gene3D - 82 164 IPR036769 -
Bva13g01953 166 MobiDBLite consensus disorder prediction 147 166 - -
Bva13g01953 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Bva13g01953 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Bva13g01953 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Bva13g01953 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01953 Bva-Chr13 15740400 15741289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01953 1 166 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 87.349 1.46e-106 300
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01953 13 15740400 15741289 Bva03g02236 03 19510047 19512966 ECH
Bva13g01953 13 15740400 15741289 Bva09g00247 09 1250410 1251170 ECH
Bva13g01953 13 15740400 15741289 Bva13g01953 13 15740400 15741289 ECH