Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01946 ATGGGTAACATAGGAAGTAGCAGCGCTAACACTCCTCGGAGAAACGGTAGCAGACGGAGCCATCCCCCACCGCCGCCAACGGTAACGCCGCAGCCTGAAATCACGGCCAATCGCTTTGTATACCCTCCCGCTACACCGTACCCATCGCAATACCCGAACCCGAATCCTCCCCCTTATTACCAGTACCCAGTTTACTATCCCCAACCACCACCCGCTATGCGGGTGCCTTTGCCTGCTCCATACGATCACCATCATCGCATGGGGTCTCATCCACATGCGGACCCGGCATGGATGGGCGGGAGGTACCCTTGCCCAATGATGCCTCCGCCTACGCCTTATGTAGACCATCAGAAGGCGGTTACTATAAGGAATGATGTTAATATCAAGAGAGAGACACTAATGATTGAGCCTGATGagcaaaattctgggcagTTCCTCGTGACATTCACATTTGATGCCACGGTTCCTGGCAGCATCACCATATTTTTCTTCGCAAAAGAAGGGGAAGACTGCAATCTTACACCAACAAAGGAAAACCTTGCACCTGTGGCCGTACATTTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGTTGGAACTGGtattgatttttcaatatttgagGAGTCAGAGTTATCGAAAGTGGGTAATTCGGATGTCTACCCTCTAGCAGTGAAGGCTGATGCATCCTCTGCTAGTAATGATGAATCAAACGGAACTCCAACATCTGGTGTCACAAACTCTCAGATAACTCAAGCGGTGTTTGAGAAACAGAAAGGAGAATTCCGGGTTAAGGTAGTGAAGCAGATCTTGTGGGTGAACGGAAAGAGGTATGAACTGCAGGAGATATATGGTATCGGAAATTCAGTGGAGAGTGACGTTGACGGGAATGACCCTGGAAAAGAGTGTGTTATCTGCTTGTCAGAGCCTCGGGACACAACTGTGCTTCCCTGTCGACACATGTGCATGTGCAGCACATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCGATTTGCAGACAACCAGTTGAGAGGCTTCTGGAGATAAAGGTCAACAACGGACCTGAGGAATG 1082 0.4815 MGNIGSSSANTPRRNGSRRSHPPPPPTVTPQPEITANRFVYPPATPYPSQYPNPNPPPYYQYPVYYPQPPPAMRVPLPAPYDHHHRMGSHPHADPAWMGGRYPCPMMPPPTPYVDHQKAVTIRNDVNIKRETLMIEPDEQNSGQFLVTFTFDATVPGSITIFFFAKEGEDCNLTPTKENLAPVAVHFEQGLGQKFRQPVGTGIDFSIFEESELSKVGNSDVYPLAVKADASSASNDESNGTPTSGVTNSQITQAVFEKQKGEFRVKVVKQILWVNGKRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSTCAKVLRFQTNRCPICRQPVERLLEIKVNNGPEE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01946 360 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Bva13g01946 360 Pfam Zinc finger, C3HC4 type (RING finger) 302 348 - -
Bva13g01946 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 360 - -
Bva13g01946 360 SMART ring_2 304 342 IPR001841 -
Bva13g01946 360 PANTHER MAHOGUNIN 1 360 IPR045194 GO:0061630
Bva13g01946 360 MobiDBLite consensus disorder prediction 1 53 - -
Bva13g01946 360 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Bva13g01946 360 MobiDBLite consensus disorder prediction 1 17 - -
Bva13g01946 360 SUPERFAMILY RING/U-box 303 349 - -
Bva13g01946 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01946 Bva-Chr13 15712090 15714797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01946 100 323 C3H Transcription Factor Family AT3G09770 65.086 4.38e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01946 - - csv:101216150 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02585 04 23104826 23108475 Bva13g01946 13 15712090 15714797 BWGD
Bva13g01946 13 15712090 15714797 Bva13g01946 13 15712090 15714797 ECH