Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01940 ATGCAAAACGAGAAGGGACAAATTACCGAGCTCTACATTCCAAGGAAATGTTCTACAACTAATCAGTTGATCACATCTAAGGGCCATGCTTCTGTCCAGATTAACATTGGGCATTTGGATGAGAGTGGCATCTACAATGGCCATTTCTCCACATTTGCCCTTTGCGGCTTTATTCGTGCTCATatTTGTGGGTTAGGAAGAGGCAAAGAGCAATA 215 0.4279 MQNEKGQITELYIPRKCSTTNQLITSKGHASVQINIGHLDESGIYNGHFSTFALCGFIRAHICGLGRGKEQ 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01940 71 PANTHER 40S RIBOSOMAL PROTEIN S21 1 61 - -
Bva13g01940 71 PIRSF RPS21e 1 65 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bva13g01940 71 Pfam Ribosomal protein S21e 1 60 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bva13g01940 71 Gene3D - 1 69 IPR038579 -
Bva13g01940 71 PANTHER 40S RIBOSOMAL PROTEIN S21 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
Bva13g01940 71 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01940 Bva-Chr13 15691252 15691966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01940 1 61 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 77.049 5.54e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01940 K02971 - gmx:100817753 115.161