Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01939 ATGCAAATGATGCCTGGTGACCCTTTTTCGCTATCTACTTCGATCGCTGGGTTTGTTCAGTCTCAGAGTCAGGAACAAAACACTAACCCTAAAGCTAAACCTAATCCAGCTCCTTCTGgcaagaagaagagaaaccTACCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCGCCCAAAACTCTCATGGCTACCAACCGATTCATTTGTGAAATATGCAACAAAGGATTTCAGAGAGATCAGAATCTTCAACTTCACCGAAGGGGACACAACCTTCCATGGAAGCTACGGCAAAGGTCCAACAAAGAGGTCATCAGAAAGAAGGTTTACATCTGCCCGGAGAAGGCCTGCGTCCACCATGATCCGGCAAGAGCACTCGGCGACCTCACCGGGATAAAGAAGCATTTTAGCCGCAAACATGGTGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAATACGCTGTCCAATCTGACTGGAAAGCTCACACCAAAACATGTGGAACAAGGGAATATAAGTGCGACTGCGGCACCCTCTTCtccagGAAGGACAGCTTCATTACCCACAGAGCTTTCTGCGATGCCTTGGCTGAAGAGAGTGCAAGGCTCACCTCAGTTGCATCTACGAACCTGAATTTCAAGAACGAAGAGAGTGTGATCAATCCACAGCCCAGTTTGGCGCATGGATTTGCCAGCCAGGGACTCCAAAACATGGCGGGTATACAGCAATTTGGTTTCAGCGGAATGGGAATGAGTGGTGAGCACCAAAGGCCGAGCTTGTCACTGTGGTTGAACCAGGGAAATCCCCAGATGAATCCTCTCGATGTGGGAGCTAATTCAGGTCTTTACGTGTCATCGAGTTCTTTGGGTTTGCCTGAGATTGTGCAAATGGCCCAAGCCAATTCCTTTGCTGCTTCTTCATTGTCTAATTTTGGAATACCTCCTTCAAATTCAGCAAAGGCAAACCTTTCTCTATCGTCACTTCCTATTGGGAAAAAAGGAGATGCAGGTGGGAATGGAAGCCTCGCCTCCATGTATTCTGAGGGTCAAAACAAACAATCAAAGCCACCTTCTCCCATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATGGGTTCTACTAGAAGCACCAATCCCTCAATGTTCAGCGGTAGTTTTGGAGTGATGAGCTCTACCTCAACTCAAGTTAGTACTAGTAGTCTAAATGCTAATGTCAACAACCAAGATCAATCCTTTCAAAATCAAGGAATGAAGCAGCCAGAGAGCTTTGCTTCAAGTGGCAGCACTGCAGGTGCAGCCATGCTTGGAAATAGTGACTTTAGTTCATTGACGCATACATCAAACAGTTCTAGTCTTGATCAGCTCTTGATGCCAAGCAATGGGAAACAAGGTGATCAACAAGTGCAATTGAAGCTCCATCATGGTTCAAACGCAGTGGAAAATCATGCTCTGACAAGAGATTTTCTAGGAATGAGCGGAGGACAAGGAGCTGGCACTCCTTTCCTACCCCAAGAGCTAGCTAAGTTCGCTTCCATAGGCTCCCCAATGGGTTTGAGCCAATTCACTGCCAACCAATG 1586 0.4628 MQMMPGDPFSLSTSIAGFVQSQSQEQNTNPKAKPNPAPSGKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVIRKKVYICPEKACVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVASTNLNFKNEESVINPQPSLAHGFASQGLQNMAGIQQFGFSGMGMSGEHQRPSLSLWLNQGNPQMNPLDVGANSGLYVSSSSLGLPEIVQMAQANSFAASSLSNFGIPPSNSAKANLSLSSLPIGKKGDAGGNGSLASMYSEGQNKQSKPPSPMSATALLQKAAQMGSTRSTNPSMFSGSFGVMSSTSTQVSTSSLNANVNNQDQSFQNQGMKQPESFASSGSTAGAAMLGNSDFSSLTHTSNSSSLDQLLMPSNGKQGDQQVQLKLHHGSNAVENHALTRDFLGMSGGQGAGTPFLPQELAKFASIGSPMGLSQFTANQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01939 528 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Bva13g01939 528 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Bva13g01939 528 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 3 520 - -
Bva13g01939 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Bva13g01939 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 520 - -
Bva13g01939 528 MobiDBLite consensus disorder prediction 345 385 - -
Bva13g01939 528 MobiDBLite consensus disorder prediction 414 433 - -
Bva13g01939 528 MobiDBLite consensus disorder prediction 341 385 - -
Bva13g01939 528 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Bva13g01939 528 MobiDBLite consensus disorder prediction 444 470 - -
Bva13g01939 528 Gene3D Classic Zinc Finger 126 204 - -
Bva13g01939 528 Gene3D Classic Zinc Finger 48 123 - -
Bva13g01939 528 MobiDBLite consensus disorder prediction 1 54 - -
Bva13g01939 528 MobiDBLite consensus disorder prediction 1 34 - -
Bva13g01939 528 SMART c2h2final6 147 167 IPR013087 -
Bva13g01939 528 SMART c2h2final6 70 92 IPR013087 -
Bva13g01939 528 SMART c2h2final6 112 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01939 Bva-Chr13 15685537 15688315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01939 1 516 IDZ Gene Family AT5G03150 47.340 1.99e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g01939 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01939 K25870 - gmx:100811274 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02592 04 23135830 23138404 Bva13g01939 13 15685537 15688315 BWGD
Bva13g01939 13 15685537 15688315 Bva13g01939 13 15685537 15688315 ECH