Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01936 ATGGGGCATAGACATATATATAGCACATCTCCAATGTTTGATGGTGAGAATGACCAGAATTGGAATCATATGCACACTGATCAACATTATGTTCACTTAGGTAGGACAAGCACTTCAGAGAATGGCTCTTTCATTTATCCGATGGAGAATATGTCTATAGACGGTATTTCTTTCACACATCCATGGAACTCATCTACAAGGTCGAATGGATATCCATCCCCAACTGTCAACATTGAAGTACCTCCTCATCAATCAGATGCATCAGTTGCTTCTCATGAgcattttcttcattcatcAAATGCTGGAGCCTTTTTTGCTGTTTCTGAAAACTATACAAACCAGCCTTCTTCTTCCCGTTATGACAGACAGGCATTTCATGTGGTTGATGGTGGTTTCATTGATCTGACCGTGGGAAGCGGAAGAGGGCCTCACAAACGAAAGAGCCCCGGAATTCCTTCAGTCTGTGAGAGAGGCAGTACTAGCAGATACTATAATGCCGGAAGTTCAACTGATCTTCCTAGATCTTCAGAATTGCTGCAGGAAAAGCCAAGTATAGATTCTCATCATATCCCTTGGGATCATGTTACTATGACACCCACCTTCAGAGGCAATGGCCTTTCCATCAGGGGTGAGGGTTCTTTAAGGAATGTGAGGAGTCGATCTGCACTTGATTTGGAATCCAACATGGCTAGGACCCATTTATCCAGCAATCATTCACACAGCTCTCTCCCTACCGGTGCTCCTGTTGACCTCCCTAGCATGGTGGATCTTTCAGGTCCAAGTTCTAGCACTTTGACGAGGGATTGGAGCCAAATGAGCATATCTCCAGCTCATGGAAGGGTGTTATTATCAGAAACAAGTGGTTTAGGTCACGAGGCTAGTCACTTCATTGTTGGAAATGGTGCTACTAATGCTTCTGTAGATGTCGGAGGTTATCATCGTGAGTTTGGTACAAGCAGAAATTCTACTGTTCCTCAAAGTTTTCACGGCTTGCGCTTGGGACATGTGGCACCTTCAGATGATGGATTGCATATGGTAGCCGAAAGTCACTCCTCTAGACATCCGAGGCCATTGACCAGTATTGGCTGGCGAAATAGTGAGCGGAACAGGAGATCAAGGATATCTAGTGATAGATATCGAATGGCTGATGAGGCTGGTTTACCTGATCGGTTTTCATCTGAGGGTTTCATGATTGTTGATCGCACATCATTTTATGGTTCTAGAAATATGTTTGATCAGCATAGAGACATGAGAATGGACATAGACAACATGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATTGGCCATGTAAGCACAGGATTGTCTGAAGACTTGATTTCCAAGTGTGTGACGGAAACAATATACTGTTCGTCAGAGCAAAACCAGGAGGAAGGAACATGTGTAATCTGCCTGGAAGAGTACAAGAACATGGACGATGTTGGGACTCTGAAAGCTTGTGGTCACGACTACCACGTGACTTGCATTAGGAAGTGGTTATCTATGAAGAACCTATGCCCTATCTGCAAAGCTTCAGCTATGGCTGATAACAATAATAACTA 1565 0.4351 MGHRHIYSTSPMFDGENDQNWNHMHTDQHYVHLGRTSTSENGSFIYPMENMSIDGISFTHPWNSSTRSNGYPSPTVNIEVPPHQSDASVASHEHFLHSSNAGAFFAVSENYTNQPSSSRYDRQAFHVVDGGFIDLTVGSGRGPHKRKSPGIPSVCERGSTSRYYNAGSSTDLPRSSELLQEKPSIDSHHIPWDHVTMTPTFRGNGLSIRGEGSLRNVRSRSALDLESNMARTHLSSNHSHSSLPTGAPVDLPSMVDLSGPSSSTLTRDWSQMSISPAHGRVLLSETSGLGHEASHFIVGNGATNASVDVGGYHREFGTSRNSTVPQSFHGLRLGHVAPSDDGLHMVAESHSSRHPRPLTSIGWRNSERNRRSRISSDRYRMADEAGLPDRFSSEGFMIVDRTSFYGSRNMFDQHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKCVTETIYCSSEQNQEEGTCVICLEEYKNMDDVGTLKACGHDYHVTCIRKWLSMKNLCPICKASAMADNNNN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01936 521 MobiDBLite consensus disorder prediction 138 175 - -
Bva13g01936 521 MobiDBLite consensus disorder prediction 154 175 - -
Bva13g01936 521 ProSiteProfiles Zinc finger RING-type profile. 469 511 IPR001841 -
Bva13g01936 521 SMART ring_2 469 510 IPR001841 -
Bva13g01936 521 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 517 - -
Bva13g01936 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 517 IPR045191 GO:0061630
Bva13g01936 521 SUPERFAMILY RING/U-box 457 515 - -
Bva13g01936 521 CDD RING-H2_TTC3 469 511 - -
Bva13g01936 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 516 IPR013083 -
Bva13g01936 521 Pfam Ring finger domain 468 511 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01936 Bva-Chr13 15662213 15668749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01936 1 521 C3H Transcription Factor Family AT2G37150 41.135 1.18e-110 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01936 - - gmx:100803627 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02595 04 23153806 23160595 Bva13g01936 13 15662213 15668749 BWGD
Bva13g01936 13 15662213 15668749 Bva13g01936 13 15662213 15668749 ECH