Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01935 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACGATAACGCTGGAGGTGGAGAGCTCTGACAGCATCGAAAATGTGAAGGCGAAGATCCAAGATAAGGAAGGAATCCCTCCGGATCAGCAGAGGCTGATCTTCGCGGGTAAGCAATTGGAAGATGGTCGTAGCCTTGCGGATTACAACATCCAAAAGGAATCGACCCTCCACCTGGTTCTTCGTCTCCGTGGAGGGAAGCAGATCTTCGCTAAAACCGTCAAAGCCCTCACTTTGAGTAAAGGCAAGACTGCTGGTAGGAATTCTTCTGGCCGTATTACGGCATTTCATCGAGGGGGTGGAGCCAAGCGATTGCAGCGAAGAGTTGATCTCAAACGATGCACTTCGTCTATGGGTATTGTAGAAAGGATAGAATATGACCCGAATCGTTCTTCTCGGATCGCTCTAGTGCGATGGGTCGAGGGGGTGCAGCCACACAGCCAGAGGAAATGCAACACCGTAGAGGATTTTGCTCCGCCGCCTAAGATTCTTGAACCTAAAACAACCACAATCCGCggccaattttctttctcttctctgccTGGGAAGGTATATGAAAGAGGGGTAGCTTCCTTCTCTCGTGGACAGCCGGCGGGTTATAGAATGGTCGGCTTTCCGACCGGAATGACTCCTTTGGTTGAGAGACCCATTATTAGTAAAAGAACTTCTGCGAAAGACGTTTTCTTATCTGCCTTCTCCTCTCCAAAGGTCAAGGGAGACACTGCATCGCTTTCTACTTTCCCAAGGGTTGCGGTAGCTGGGGCAAAGCCTGCTTTTTTCGTTCCGCGACCCAGAGAGCAACTAAATGGTGAAAACGTATTCTCTCTTTCTGAGGTTCGAAAGTGGAGACCGGATAGCAATCTCTGGGAACATAGGATCAAACGGAAAGCAGCGGTTTCTTGGCAGAGTTCCGGCAAGATACTTTA 956 0.4833 MQIFVKTLTGKTITLEVESSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRSLADYNIQKESTLHLVLRLRGGKQIFAKTVKALTLSKGKTAGRNSSGRITAFHRGGGAKRLQRRVDLKRCTSSMGIVERIEYDPNRSSRIALVRWVEGVQPHSQRKCNTVEDFAPPPKILEPKTTTIRGQFSFSSLPGKVYERGVASFSRGQPAGYRMVGFPTGMTPLVERPIISKRTSAKDVFLSAFSSPKVKGDTASLSTFPRVAVAGAKPAFFVPRPREQLNGENVFSLSEVRKWRPDSNLWEHRIKRKAAVSWQSSGKIL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01935 318 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Bva13g01935 318 Gene3D - 85 159 IPR012340 -
Bva13g01935 318 Gene3D - 1 84 - -
Bva13g01935 318 PANTHER RIBOSOMAL PROTEIN L2 82 315 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bva13g01935 318 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bva13g01935 318 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bva13g01935 318 CDD Ubl_ubiquitin 1 76 - -
Bva13g01935 318 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva13g01935 318 SMART Ribosomal_L2_2 96 166 IPR002171 GO:0003735|GO:0005840|GO:0006412
Bva13g01935 318 SUPERFAMILY Nucleic acid-binding proteins 79 153 IPR012340 -
Bva13g01935 318 PANTHER 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATED 82 315 - -
Bva13g01935 318 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva13g01935 318 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bva13g01935 318 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bva13g01935 318 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bva13g01935 318 Pfam Ribosomal Proteins L2, RNA binding domain 96 152 IPR022666 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01935 Bva-Chr13 15660505 15661628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01935 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 96.053 3.21e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01935 - - nnu:28482686 326.25