Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01934 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACGCTCGAGGTGGAGAGCTCTGACACCATCGACAACGTCAAGGCTAAGATCCAAGATAAGGAAGGGATCCCACCCGATCAACAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCACACCCTTGCCGATTACAACATCCAGAAGGAGTCTACCCTTCATCTCGTCCTTCGATTGAGGGGAGGTATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACAATCACCCTCGAGGTCGAGAGCTCCGATACCATCGATAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGAGGCTCATCTTTGCTGGAAAGCAATTGGAGGATGGCCGTACCCTTGCCGATTACAATATCCAGAAAGAATCGACCCTTCATCTTGTTCTCCGATTGAGGGGTGGTATGCAGATTTTCGTCAAAACTCTAACCGGCAAAACCATTACTTTGGAGGTTGAGAGCTCTGATACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTTATCTTTGCCGGTAAACAATTGGAAGATGGTCGTACCCTTGCCGATTACAACATCCAGAAAGAATCGACCCTTCACCTGGTTCTTCGTCTCCGTGGAGGAATGCAGATTTTCGTGAAAACCCTCACTGGCAAAACTATCACTTTGGAAGTGGAGAGTTCGGATACCATTGATAATGTTAAGGCGAAAATTCAAGATAAGGAAGGAATTCCCCCAGATCAGCAGCGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGAGGACCCTTGCTGATTATAACATTCAGAAAGAGTCCACTCTTCATTTGGTGCTGCGACTTCGTGGAGGTATGCAGATTTTCGTCAAGACTCTCACCGGGAAGACAATCACCTTGGAGGTGGAGAGCTCTGACACCATAGATAACGTTAAGGCAAAGATTCAGGACAAGGAAGGTATTCCTCCGGATCAACAGCGTCTGATTTTCGCTGGGAAACAGCTCGAGGATGGTCGTACGCTTGCTGATTATAACATTCAGAAGGAATCAACTCTTCACCTTGTCCTCCGTCTGCGTGGTGGGGATTTCTG 1148 0.4843 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGHTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01934 382 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Bva13g01934 382 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Bva13g01934 382 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bva13g01934 382 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bva13g01934 382 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Bva13g01934 382 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Bva13g01934 382 SUPERFAMILY Ubiquitin-like 228 304 IPR029071 -
Bva13g01934 382 CDD Ubl_ubiquitin 77 152 - -
Bva13g01934 382 SMART ubq_7 229 300 IPR000626 GO:0005515
Bva13g01934 382 SMART ubq_7 305 376 IPR000626 GO:0005515
Bva13g01934 382 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva13g01934 382 SMART ubq_7 153 224 IPR000626 GO:0005515
Bva13g01934 382 SMART ubq_7 77 148 IPR000626 GO:0005515
Bva13g01934 382 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bva13g01934 382 PRINTS Ubiquitin signature 184 204 IPR019956 -
Bva13g01934 382 PRINTS Ubiquitin signature 205 226 IPR019956 -
Bva13g01934 382 PRINTS Ubiquitin signature 163 183 IPR019956 -
Bva13g01934 382 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Bva13g01934 382 PANTHER - 220 380 - -
Bva13g01934 382 PANTHER - 1 156 - -
Bva13g01934 382 PANTHER - 70 235 - -
Bva13g01934 382 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Bva13g01934 382 CDD Ubl_ubiquitin 229 304 - -
Bva13g01934 382 PANTHER UBIQUITIN 1 156 - -
Bva13g01934 382 PANTHER UBIQUITIN 220 380 - -
Bva13g01934 382 PANTHER UBIQUITIN 70 235 - -
Bva13g01934 382 PANTHER UBIQUITIN 143 309 - -
Bva13g01934 382 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Bva13g01934 382 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Bva13g01934 382 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Bva13g01934 382 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Bva13g01934 382 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bva13g01934 382 SUPERFAMILY Ubiquitin-like 151 228 IPR029071 -
Bva13g01934 382 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bva13g01934 382 CDD Ubl_ubiquitin 1 76 - -
Bva13g01934 382 CDD Ubl_ubiquitin 153 228 - -
Bva13g01934 382 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bva13g01934 382 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bva13g01934 382 Gene3D - 153 228 - -
Bva13g01934 382 Gene3D - 305 382 - -
Bva13g01934 382 Gene3D - 1 76 - -
Bva13g01934 382 Gene3D - 77 152 - -
Bva13g01934 382 Gene3D - 229 304 - -
Bva13g01934 382 CDD Ubl_ubiquitin 305 380 - -
Bva13g01934 382 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Bva13g01934 382 PANTHER - 143 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01934 Bva-Chr13 15656702 15658145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01934 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 9.32e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01934 K08770 - pvy:116145339 735.717