Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01917 ATGGCTAGTGATTCGTCGTTTTTGTTCGCTGGCATTCGTTTTGATAGAAAGAGATTCGGCGCCGATATTTCCAGGTTCGAGaaaaaagagagtgaTAGTTCAGTGGATATTTCGAGCTCAGTTGAAGCTGAGAAAACAGAACCAGTGGAAGAGAAATCGTCTGTCAAGAAGAGGAAGCGGAAGGGAGCTGTTTCTGGAACGGTTGAAGGATTCAGCGTcttcaaaaaatcaaaatcagctGCACAATCAAGTAATCAACCAAAAGATGAACACGTGGCCGAAAATGAGTCCATCGAACGGAAGAAGGAACAGAATAGACAACTTGAGCGGGATGCTCTCTTCAGGAAAAAGCACAACATTCATGTATCCGGGTATAATGTCCCATCGccacttcaaaattttgaagagttGAAGTCAAGATATGGATGTGAGTCTTATTTGATACGCAATCTTGCTGAGCTTGGGTTCAGAGAACCAACACCCATCCAACTTCAGGCTATTCCAGTACTTTTATCTGATCGCGAATGCTTTGCTTGTGCCCCAACTGGCTCGGGAAAAACCTTGGCGTTTGTATGTCCAATGCTTATAAAGCTTAAGTCTCCAGAAAAGGATGGTATTCGAGCTGTGATCCTGTGTCCTACCCGTGAATTATCTGCTCAAACATATAGAGAGTGTAAAAAACTGgctaaaggaaagaaattttgtatCAAGTTGATGACTAAAGAGCTTGCAAGAAAAGCTGATTTTTCCAAATTGCCATGTGATATACTTATATCTACTCCACTTCGATTACGCCTGGCTGTCAAGAGGAAAAAGGTTGATCTGAGAAGGGTTCAATATCTTGTCTTAGATGAATCCGATAAGCTCTTTGAGCTTGTATTGTTCAAGCAGATTGATACTATAATTAAAGCATGCTCAAATCCCTCAATAATACGTTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGTGCACGGGAACTTATGCATGATGCTGTTCGAGTCATTGTTGGCAGAAAGAATATGGCATCTGAAACAATCAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAGCTTGTGGCAATTCGGCAAAGCTTTGCAGAGAGTCTAAATCCTCCTGTATTGGTCTTTGTCCAAAGCAAGGAACGAGCAAAGGAACTCTATGATGAACTTGCATATGACAACATTAGAGTTGGTGTCATTCATTCTGACTTGTCCCAAAATGAGCGAGAAGATGCTGTTGACAACTTCAGAGCTGGCAAAACATGGGTTCTGATTGCTACTGATGTAGTTGCTCGTGGCATGGATTTTAAAGGCGTGAATTGCgtgattaattatgattttccaGATTCTGCGGCTGCATACATCCACAGAATTGGTCGTTCGGGCAGAGCAGGAAGGGTCGGAGAAGCTATAACCTTTTACACGGAGGAAGACATCCCATTCCTGCGGAATATCGCTAATCTGATGGCAGCGTCAGGTTGTGAGGTTCCATCATGGCTTACGGACTTGcgcaaaaagaaatggaagaaacaCCGACCCAAAAGAGATTCAATCTCTACCAAACCAAAAGATTA 1589 0.3971 MASDSSFLFAGIRFDRKRFGADISRFEKKESDSSVDISSSVEAEKTEPVEEKSSVKKRKRKGAVSGTVEGFSVFKKSKSAAQSSNQPKDEHVAENESIERKKEQNRQLERDALFRKKHNIHVSGYNVPSPLQNFEELKSRYGCESYLIRNLAELGFREPTPIQLQAIPVLLSDRECFACAPTGSGKTLAFVCPMLIKLKSPEKDGIRAVILCPTRELSAQTYRECKKLAKGKKFCIKLMTKELARKADFSKLPCDILISTPLRLRLAVKRKKVDLRRVQYLVLDESDKLFELVLFKQIDTIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLVAIRQSFAESLNPPVLVFVQSKERAKELYDELAYDNIRVGVIHSDLSQNEREDAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRVGEAITFYTEEDIPFLRNIANLMAASGCEVPSWLTDLRKKKWKKHRPKRDSISTKPKD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01917 529 MobiDBLite consensus disorder prediction 25 64 - -
Bva13g01917 529 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 526 - -
Bva13g01917 529 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 526 - -
Bva13g01917 529 MobiDBLite consensus disorder prediction 76 105 - -
Bva13g01917 529 Gene3D - 111 344 IPR027417 -
Bva13g01917 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 490 IPR027417 -
Bva13g01917 529 Coils Coil 91 111 - -
Bva13g01917 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
Bva13g01917 529 Pfam DEAD/DEAH box helicase 160 324 IPR011545 GO:0003676|GO:0005524
Bva13g01917 529 CDD SF2_C_DEAD 349 479 - -
Bva13g01917 529 MobiDBLite consensus disorder prediction 43 57 - -
Bva13g01917 529 CDD DEADc_DDX52 147 340 IPR044764 GO:0003724|GO:0005524|GO:0030490
Bva13g01917 529 SMART helicmild6 389 470 IPR001650 -
Bva13g01917 529 SMART ultradead3 155 352 IPR014001 -
Bva13g01917 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 509 IPR001650 -
Bva13g01917 529 Gene3D - 345 526 IPR027417 -
Bva13g01917 529 Pfam Helicase conserved C-terminal domain 372 470 IPR001650 -
Bva13g01917 529 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Bva13g01917 529 MobiDBLite consensus disorder prediction 89 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01917 Bva-Chr13 15577305 15581893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01917 130 508 Eukaryotic Initiation Factors Gene Family AT3G19760 32.115 2.44e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01917 K14779 - gmx:100800969 820.076