Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01915 ATGGGGAAGACAAGAGGTATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGCAGGAGGCAACGGTGGGCAGACAAGTCATACAAGAAGTCTCACCTTGGCAATGAATGGAAGAAGCCATTCGCTGGATCATCCCATGCCAAGGGTATCGTTCTTGAGAAGATAGGTATTGAAGCTAAGCAGCCCAACTCTGCCATCCGTAAGTGTGCCAGGGTTCAACTCATTAAAAATGGGAAGAAGATTGCTGCATTTGTTCCAAACGATGGTTGCTTAAATTACATTGAGGAGAATGACGAAGTCTTGATAGCTGGATTTGGGCGAAAAGGTCATGCTGTGGGAGATATTCCGGGTGTTAGATTCAAGGTCGTGAAGGTCTCTGGTGTGTCCCTGCTTGCTCTTTTCAaggagaaaaaggagaagCCAAGGTCTTA 428 0.4626 MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01915 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva13g01915 142 MobiDBLite consensus disorder prediction 1 30 - -
Bva13g01915 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Bva13g01915 142 Gene3D - 25 142 IPR012340 -
Bva13g01915 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva13g01915 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva13g01915 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva13g01915 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva13g01915 142 MobiDBLite consensus disorder prediction 9 25 - -
Bva13g01915 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva13g01915 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01915 Bva-Chr13 15568280 15569754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01915 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 2.17e-96 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01915 K02973 - fve:101303309 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00207 04 1259874 1264102 Bva13g01915 13 15568280 15569754 BWGD
Bva13g01915 13 15568280 15569754 Bva03g02430 03 20673522 20675800 ECH
Bva13g01915 13 15568280 15569754 Bva09g00205 09 1039826 1047890 ECH
Bva13g01915 13 15568280 15569754 Bva13g01915 13 15568280 15569754 ECH
Bva13g01915 13 15568280 15569754 Bva07g02441 07 19701844 19702505 ECH