Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01906 ATGTTGGATCTTAATCTTAACGTGGGTTCCTTTGATTCTGCATCGGATTCCGTCGACATGGGTTCTGGGAAGATTCTTCCACTTTCCGGTAGCCAAATGGATAGCTCCGGAAGCTTCAATTCCTCTGTTGTCAATGCCGATACCCCCGCCAACACTTGTGAGGAAGATTCTTGCTCCTATGGCGATGCCTTTGCTTATAGCTTCGGCATACTGAAGAAGAATGCTGCAGATGATGGCACATGCTCCGAACCAGTTGAACTTCCCCGAGACAAAGGTGAAGATGGCCGcaaaagaatcatccaattttttCCAACGGCCAGAATCGAAGAAGCCGGTGTCACTGAGTTCGGCACGGCTCAGCAGTTTCCTGGTTCATCCTTAGGTAAGGGGTGGTTGGATTTCTCGTCTAAGGAGGTCAGTGACGGTTTGGAACTGGAGCAGGGAATGTTACACCCGAAGCAGAGACAGCAGGTGAAGAAGAGCCGGCGGGGACCGAGGTCTCGGAGCTCGCAGTATCGTGGTGTTACTTTTTATCGAAGAACGGGCAGATGGGAATCACATATTTGGGACTGTGGCAAACAAGTGTACTTGGGCGGATTTGATACAGCTCATGCTGCAGCAAGGGCATATGATCGAGCCGCAATCAAGTTCCGTGGTATTGATGCAGATATCAATTTCAACATCAGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTCGACAGAGCACGGGTTTCTCAAGGGGGAGCTCGAAGTACAGGGGGGTCACTCTGCATAAATGTGGACGATGGGAAGCTCGCATGGGGCAGTTTCTGGGGAAAAAGTATATATATCTTGGACTATTCGACAGCGAAATGGAGGCTGCAAGGGCATATGATAAGGCTGCTATAAAATTCAATGGGAGGGAAGCGGTTACAAACTTTGAGCCGAGCACATATGAAGGGGAGAAAACTTCTCTGGATGATAGCAAACTGAATCTTGATCTTAACTTGGGTATAGCTCCCCCTTCTGTCTCTGATGTTCAAATGGAGAGCATCCAAAATGTGAGTGATTTTCAAGTTCAGCGTGGCTGGAATGACATGCACATTGATGGGAGTGTTATGCACTTGGTATCAAGATCGTTGATGGCTCAGTCGTCCCATGGCTTCTCCATAGCTTCTGGGCATCCTTCTGTCTGGAGCGGTACCAATTTATTCCCAATTTGTCAGGAAACAGCAATAGAGCAGAGGATGGAAGCTGATTCCTTGCCAAAATGGTCTTGGCATATGCAAGGTCCTTATTCCGCAGAGACTCTGATTCCACCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCGTCAAGAACATTACCATCTGCTGCTGATAGTCAAATTCATTATCCAAACACTCATTTTTCTCCATCAATCACCAACTCCAGTACTATATCGCCTTTCTACTGCAGAAGCTG 1484 0.4663 MLDLNLNVGSFDSASDSVDMGSGKILPLSGSQMDSSGSFNSSVVNADTPANTCEEDSCSYGDAFAYSFGILKKNAADDGTCSEPVELPRDKGEDGRKRIIQFFPTARIEEAGVTEFGTAQQFPGSSLGKGWLDFSSKEVSDGLELEQGMLHPKQRQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNISDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEMEAARAYDKAAIKFNGREAVTNFEPSTYEGEKTSLDDSKLNLDLNLGIAPPSVSDVQMESIQNVSDFQVQRGWNDMHIDGSVMHLVSRSLMAQSSHGFSIASGHPSVWSGTNLFPICQETAIEQRMEADSLPKWSWHMQGPYSAETLIPPFSAAASSGFPSSSRTLPSAADSQIHYPNTHFSPSITNSSTISPFYCRS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01906 494 CDD AP2 262 322 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 Pfam AP2 domain 262 312 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 SUPERFAMILY DNA-binding domain 262 321 IPR016177 GO:0003677
Bva13g01906 494 MobiDBLite consensus disorder prediction 145 172 - -
Bva13g01906 494 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 SMART rav1_2 263 326 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 SMART rav1_2 171 233 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 SUPERFAMILY DNA-binding domain 170 229 IPR016177 GO:0003677
Bva13g01906 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 481 - -
Bva13g01906 494 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 481 - -
Bva13g01906 494 CDD AP2 171 229 IPR001471 GO:0003700|GO:0006355
Bva13g01906 494 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700|GO:0006355
Bva13g01906 494 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01906 Bva-Chr13 15500515 15503676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01906 156 343 AP2-EREBP Transcription Factor Family AT4G36920 81.122 3.49e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva13g01906 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01906 K09284 - gmx:100797238 550.436