Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01905 ATGGCCGCTGCTGCTGCTCGCCCCCTCGTGACAGTGCAATCATTGGAGGGTGATATGGCGACTGATGCACCCACAACCGTTGCACTACCCGATGTGATGAAGGCATCAATTCGACCCGATATTGTTACCTTTGTTCACTCCAACATCTCCAAGAACAGCAGGCAACCTTACGCCGTCAGCAAGAGGGCTGGTCATCAGACCTCAGCTGAGTCATGGGGTACCGGACGTGCTGTTTCTCGTATTCCCCGTGTTCCCGGTGGCGGTACCCACCGCGCTGGACAGGGTGCCTTCGGTAACATGTGCCGCGGCGGTCGTATGTTTGCTCCAACCAAGATTTGGCGCCGCTGGCACAGGAAGATTAATGTAAACCAGAAGAGGTATGCGGTTGTCTCAGCCATTGCTGCTTCTGCCATTCCATCCTTAGTTTTGGCTAGAGGTCACAGAATCGAGTCCGTGCCTGAATTTCCCTTGGTGGTGAGCGATTCAGCTGAAGGCGTCGAGAAGACGCGTGATGCTCTCAAAGTACTGAAGCAGATCGGTGCTTCTCATGATGCCGACAAGGCAAAGGAAAGCCATTCCATCCGTCCTGGTAAGGGTAAAAAGAGGAACAGGCGATACATCTCTCGTAAGGGTCCACTCATCGTTTATGGAACCGAGGGGGCTAAGCTAGTTAAGGCTTTCCGGAACATCCCAGGTGTTGAGATTGCAAATGTGGAAAGGTTGAATCTTCTTAAGCTTGCTCCTGGTGGTCATCTCGGTAGGTTTGTCATTTGGACCAAGTCTGCATTTGAGAAGCTTGATTCTATCTATGGTTCATTCGACAAGCCTTCAGATAAGAAGAAGGGCTACCTGCTTCCAAGACCAAAAATGGTGAATTCTGATTTGGCGAGAATTATTAACTCTGATGAGATTCAATCTGTTGTGAAGCCCATCAAGAAGGAAGTCAAGAGAGCACCACTGAAGAAGAACCCACTTAAGAATCTGAATGCATTGTTGAAGCTCAATCCATATGCTAAGACTGCTAGAAGGATGGCCCTTTTGGCTGAGGCTCAGCGTGTGAAAGCAAAGCAGGAGAAGCTTGATAAAAAGAGGAAGTCCATCCCTAAGgAGGAGGCTTCTGCCATTAAGGCAGCTGGGAAGGCATGGTATCAGACCATGATTTCTGACAGCGACTATACAGAGTTCGAAAACTTCTCAAAGTGGTTAGGTGTTTCCCAGTG 1220 0.4943 MAAAAARPLVTVQSLEGDMATDAPTTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIESVPEFPLVVSDSAEGVEKTRDALKVLKQIGASHDADKAKESHSIRPGKGKKRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSDKKKGYLLPRPKMVNSDLARIINSDEIQSVVKPIKKEVKRAPLKKNPLKNLNALLKLNPYAKTARRMALLAEAQRVKAKQEKLDKKRKSIPKEEASAIKAAGKAWYQTMISDSDYTEFENFSKWLGVSQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01905 406 SUPERFAMILY Ribosomal protein L4 10 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bva13g01905 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Bva13g01905 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
Bva13g01905 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Bva13g01905 406 MobiDBLite consensus disorder prediction 56 95 - -
Bva13g01905 406 Pfam Ribosomal protein L4/L1 family 28 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Bva13g01905 406 MobiDBLite consensus disorder prediction 56 74 - -
Bva13g01905 406 MobiDBLite consensus disorder prediction 183 202 - -
Bva13g01905 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bva13g01905 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01905 Bva-Chr13 15494939 15497043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01905 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.020 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01905 K02930 - gmx:100779764 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02622 04 23286730 23288847 Bva13g01905 13 15494939 15497043 BWGD