Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01900 ATGCCGCCCAAGCAGCAATCTAAAGCTGATGTAGCTAAGAAGCAGAAGATCGTAGAGGATAAAACTTTCGGTctcaaaaacaagaataagaGCAAAAATGTTCAGAAATATGTTCAGAACCTCAAGCAATCCGTGCAGCCCAAGCCTGATCCATCCAAAGTCGCTGCCAAGaaaaagaaggagGAAGATAAGGCAAAGGAGAAGGAGCTAAACGATTTGTTCAAAATCGCAGTCAGCCAACCTAAAGTACCAGTTGGTGTTGATCCCAAGTCCATAGTGTGCGAGTTTTTTAAAGTTGGACAGTGCACCAAGGGCTTTAAATGCAAGTTCTCACATGACTTGAATGTACAGAGGAAAGGGGAAAAGATTGATATTTACAGTGATAAGCGCGACCAGGaaaCAATGGAGGATTGGGATCAAGAGACATTGGAGAAGGTGGTGGAGTCAAAGAAAAACGAGTATCAGCAGAACAAACCAACTGATATAGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCTAATGGTGGTAAGAATTGTCACTATAGACATGCTCTTCCCCCTGgatatgttttaaaatctCAAATGAAGGCTCTGTTAGaggaagaaagtgaaaaaatacCAATTGAGgaggaaattgaaaatcagCGTTCCAAATTGACAACGTCAACTCCTATGACTCCTGGGTTATTCAtgcaatggaagaagaagaagatagagGAAAGAGATGCTAATTTGGCTGCACAACAGGCTGATAGAGCTAAGAATGACCGCATGAGTGGTCGTGAGCTGTTTTTGTCAGATGCTAGTTTATTTGTCGATGATGCTGAGGCATATGACAAGTACCAAAGAGAACCAGAACAGGCTGATGATGAACAAGCGGATGGGAATGCTACTGGTGATGGTCCGAGCACCTCAGCAACAGCTGATGCTGATGATGACGACGACGACGACGACGACGAACTGGACATAGATGAGTTGAATGAATTGGAAGCTAGTTTATCAAAGACATCAATCCAAATAAACGAGCCTGGAGCTGAAGCTTA 1073 0.3942 MPPKQQSKADVAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPSKVAAKKKKEEDKAKEKELNDLFKIAVSQPKVPVGVDPKSIVCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKNEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKIPIEEEIENQRSKLTTSTPMTPGLFMQWKKKKIEERDANLAAQQADRAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPEQADDEQADGNATGDGPSTSATADADDDDDDDDDELDIDELNELEASLSKTSIQINEPGAEA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01900 357 Coils Coil 246 266 - -
Bva13g01900 357 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 356 - -
Bva13g01900 357 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Bva13g01900 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 356 - -
Bva13g01900 357 MobiDBLite consensus disorder prediction 40 64 - -
Bva13g01900 357 MobiDBLite consensus disorder prediction 317 337 - -
Bva13g01900 357 Gene3D - 87 204 - -
Bva13g01900 357 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Bva13g01900 357 Pfam DRG Family Regulatory Proteins, Tma46 215 297 IPR032378 -
Bva13g01900 357 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Bva13g01900 357 Gene3D - 205 279 - -
Bva13g01900 357 MobiDBLite consensus disorder prediction 289 357 - -
Bva13g01900 357 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Bva13g01900 357 SMART c3hfinal6 158 195 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01900 Bva-Chr13 15471906 15475340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g01900 DFRP_C 8.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01900 - - gmx:100806617 582.022