LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva13g01895	ATGACAAGGGACATCCTGATGAGCGTTGATGGCGATGATAAGGAGTTGCAAAAATTGACTCAACGTCCACAAGATGGGAAGAAAAGATTTGAAGATGGAGTGGCGGGTGAGGAACACAGTTTAAATAAGGACGATGAGTTGAAAAGTAATGGGATAGCTGAAGAAGTTAAGGTTGAGAAGGAGGGGTCTGTGGATGCCCCTGTTGTCCAGCACACACCACAGCAGCAATCTCAAGGGGCAATTGTTTGTTGGGAGAGGTTTCTACATCTTAGGTCCCTGAAGGTTCTGCTCGTGGAGAATGATGACTCTACTCGCCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATCGAAGCAGCAAATGGATTGCAAGCATGGAAGATATTGCAGGATCTGACCAATCATATTGATCTTGTTTTAACTGAGGTAGCAATGCCTTTCTTATCAGGCATTGGTCTTCTATGCAAGATTATGAGCCACAGAACACGTAAAAACATTCCTGTAATTATGATGTCATCTTATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGATTTTCTTGTGAAACCCATACGGAAGAACGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGCCATAGTTCTAGTGGGAGTGGAAGTGAAAGTGGCACACAAACCCAGAAATCTATAAAATCAAAGAGTCTTGAGAAGTCTGATAACAACACTGGCAGCAACGATGAGGATGACAATGGAAGTGTTGGTTTGAATATTGGAGATGGAAGTGACAATGGCAGCGGCACTCAGagCTCCTGGACCAAACAAGCTGTAGAAGTTGAAAGTCCCAAACCAGTGTCCCAATGGCATCATATTGCTGAGTGCCCTGATAGCACCTGTGCTCAAGTTGTTCACTCTAATGCTGAAGTTTGTTGGAATACTATGGTCCTATCCACAAAGGAGTGTCCAGAACAGAAGGAACAGCTTGAGCTGAAAGCTGACCTGAGTAAAGACGTTGACTTAACTCTGGAGTACAGAAATGAGGTTCCAGTCAAAACTCCAGGTGCAAAACAGAGCAACCCACTTGATGTAGGctcttcaaaattcaatgaGCATGTTACTAGAGGACAGCTAGACCTTAACTGCGAGAATCTATCTAGCAAGCTAAGGTGCAAAGGGCCTTCACTTTCTGATGGCATTAATAGCACTTCTGATTCCCAGATGCATGGTGGAGAATGTGAGACCCCAGGAAGAAGAGTCAAGACCTCAGATATTGAAAACAAATCTACTAACAACAATGAAGAATTTCCATCTCTTGAGCTCAGTTTAAAGAGACTTAGAGGGGTTAAAGATTCTGGGATCACAATTCAGGATGAAAGAAATGTTTTAAGACGTTCAGACCTTTCAGCCTTCTCGAGGTACAACGCAGCATCAAATACTAAAAAGTCGTCTCCTACTGGGTGTCTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCACGTGACATTCAATCTCATTCTAGCAGCAATCCTCCTAACCAGAACTCAAATGGTGCAAGCAACAATATTGATATGGGTTCCACTACCAATAATGCTTTCACTAAATCTGAAATTATAAGCGAGCCAGCTGTGGCGTCAACTACCAAATGTTTGTACCAGTCATTTGCTTTCCAGCCTATAAAGAACAACCTTTTATGTACCTCTCAGCAAGTTGTATTGCATAACAATGATGAGATGACTGCTAGAGCTTTGCTGGCGCCACCAAGAGGAGTGATACACAAGGACTCTGCAATTCAGGACTTCCATTGTCATTTTGAAAACCACAACTGTGTTACTAATAGCCTGCAACACCTGCTGCCATCTGATCATGATGATGCACCATTAAAGAAAATGGCTGCTGCTGCACCACATTGTGGGTCGTCAAATGTAGTGGAAGTGCTCATTGAAGGTAACCTGGGAAATTACAGTGTCAATAGAAGCGCATCAGGCAGCAATAATGGAAGCAATGGACAAAATGGGTGCAGCACTGCAGCTAATGCTGGAGGGACAAACATAGAAAGCAGCGTCGCGATTTCAGGGAACAGTGGAAGTGGTGATGGGAGTGGGAGTGGGAGCGGGAGCGCTAGCGCTAACAGAGTAGATCAAAACAGGACTTCTCAAAGAGAAGCAGCCATAACTAAATTTCGccagaagagaaaggaaaggtgCTTCCGGAAAAAGGTTCGATATCAAAGCAGAAAGAAATTAGCGGAACAACGACCTCGCTTTCGTGGACAATTTGTGCGACAGTcttcaaatgaaaatacaaAAGAGGTTCAAGAAGGGACAACCTTATTATACCATAACCCTGTTTTCACGTTAGCTGAGAAAGGAGGTTA	2402	0.423	MTRDILMSVDGDDKELQKLTQRPQDGKKRFEDGVAGEEHSLNKDDELKSNGIAEEVKVEKEGSVDAPVVQHTPQQQSQGAIVCWERFLHLRSLKVLLVENDDSTRHVVTALLRNCSYEVIEAANGLQAWKILQDLTNHIDLVLTEVAMPFLSGIGLLCKIMSHRTRKNIPVIMMSSYDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSIKSKSLEKSDNNTGSNDEDDNGSVGLNIGDGSDNGSGTQSSWTKQAVEVESPKPVSQWHHIAECPDSTCAQVVHSNAEVCWNTMVLSTKECPEQKEQLELKADLSKDVDLTLEYRNEVPVKTPGAKQSNPLDVGSSKFNEHVTRGQLDLNCENLSSKLRCKGPSLSDGINSTSDSQMHGGECETPGRRVKTSDIENKSTNNNEEFPSLELSLKRLRGVKDSGITIQDERNVLRRSDLSAFSRYNAASNTKKSSPTGCLGSNSPHNNSLEVTKKDSSRDIQSHSSSNPPNQNSNGASNNIDMGSTTNNAFTKSEIISEPAVASTTKCLYQSFAFQPIKNNLLCTSQQVVLHNNDEMTARALLAPPRGVIHKDSAIQDFHCHFENHNCVTNSLQHLLPSDHDDAPLKKMAAAAPHCGSSNVVEVLIEGNLGNYSVNRSASGSNNGSNGQNGCSTAANAGGTNIESSVAISGNSGSGDGSGSGSGSASANRVDQNRTSQREAAITKFRQKRKERCFRKKVRYQSRKKLAEQRPRFRGQFVRQSSNENTKEVQEGTTLLYHNPVFTLAEKGG	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva13g01895	800	PANTHER	TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37	34	761	-	-
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	696	730	-	-
	Bva13g01895	800	Gene3D	-	92	248	-	-
	Bva13g01895	800	SMART	REC_2	93	208	IPR001789	GO:0000160
	Bva13g01895	800	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	34	761	IPR045279	GO:0009736
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	1	50	-	-
	Bva13g01895	800	ProSiteProfiles	Response regulatory domain profile.	94	212	IPR001789	GO:0000160
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	217	286	-	-
	Bva13g01895	800	Pfam	CCT motif	729	771	IPR010402	GO:0005515
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	217	234	-	-
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	477	501	-	-
	Bva13g01895	800	Pfam	Response regulator receiver domain	95	206	IPR001789	GO:0000160
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	477	536	-	-
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	400	434	-	-
	Bva13g01895	800	ProSiteProfiles	CCT domain profile.	729	771	IPR010402	GO:0005515
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	248	279	-	-
	Bva13g01895	800	MobiDBLite	consensus disorder prediction	512	536	-	-
	Bva13g01895	800	SUPERFAMILY	CheY-like	91	217	IPR011006	-
	Bva13g01895	800	CDD	psREC_PRR	95	198	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva13g01895	Bva-Chr13	15433538	15445042	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva13g01895	169	773	Response Regulator Gene Family	AT5G02810	49.840	3.20e-124	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Pseudo ARR-B	Bva13g01895		Response_reg	3.6e-20	CL0304