Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01858 ATGTTGTCTTTGCCGTATGCTAACTTCGACTCCAGCCTGCGAACTTTGTCTGGCCAGGCCGAAGGGTTTGGCCGCTTTGCGATCGGTGGGCTTCACGGTCCCCTCCATAAAGTCACAACTTTTGCAGATGATGGACCAGGATCTCTACGTGAAGCGTGTCGTAGAAAAGAACCACTGTGGATTGTCTTTGAAGTATCAGGCGCTATTCATCTCTCTTCTTACTTGAGTGTTTCATCTTACAAAACCATTGACGGGCGAGGCCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTCAAGGAATGTGAACATGTAATAATATGCAATTTAGAGTTAGAGGGTGGTCGAGGACATGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCATATATGGATAGATCGATGCAGTCTTCGTGATTTTGATGATGCACTGATAGATATCACCCGAGAAAGTACAGATATTACTATTTCTAGATGTCATTTTTCTCAGCATGACAAAACAATGCTCATCGGGGCCGATCCCTCTCACACCAGTGATAGATGCATCAGAGTAACTATTCACCATTGTTTTTTTGATGGGACCCGACAACGGCATCCTCGTGTTAGATATGCAAAAGTACAtctttacaataattacaCCAGAAACTGGGGCATATATGCAGTATGTGCTTGTGTGGAATCACAGATATACTCGCAATGTAATATCTACGAAGCAGGGCAGAAGAAGGTAGCATTCAAGTATCTTCCTGAAAAGGCAGCAGACAAGGAGGTGGCAGCAGCTGGTCACATAAGGTCTGAAGgagatttatttgtaaatgGAACACAACATGGTTTAATGACTGAGAGTGTTGGATGTGGCATTTTCCATCCTAGTCAATACTATGCCACATGGACGGTGGAACCTCCTTCACATGATCTAAAACATTTTCTCCAGCACTGCACTGGATGGCAATCTGTTGCGCTCCCCGCAGATCAACCAATGACTGCTTA 995 0.4322 MLSLPYANFDSSLRTLSGQAEGFGRFAIGGLHGPLHKVTTFADDGPGSLREACRRKEPLWIVFEVSGAIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGHDVDGIQIKPNSKHIWIDRCSLRDFDDALIDITRESTDITISRCHFSQHDKTMLIGADPSHTSDRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCACVESQIYSQCNIYEAGQKKVAFKYLPEKAADKEVAAAGHIRSEGDLFVNGTQHGLMTESVGCGIFHPSQYYATWTVEPPSHDLKHFLQHCTGWQSVALPADQPMTA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01858 331 Gene3D - 6 303 IPR012334 -
Bva13g01858 331 Pfam Pectate lyase 75 236 IPR002022 -
Bva13g01858 331 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Bva13g01858 331 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Bva13g01858 331 PRINTS Pollen allergen Amb family signature 74 90 IPR018082 -
Bva13g01858 331 PANTHER PECTATE LYASE 18-RELATED 2 323 IPR045032 GO:0030570
Bva13g01858 331 SMART amb_all 66 244 IPR002022 -
Bva13g01858 331 PANTHER PECTATE LYASE 2 323 - -
Bva13g01858 331 SUPERFAMILY Pectin lyase-like 18 321 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01858 Bva-Chr13 15266987 15269732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01858 43 326 Polysaccharide Lyase AT3G55140 77.465 3.14e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01858 K01728 - tcc:18597629 580.482