Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01844 ATGAATAAGAGACAGAGAGAAAACCACGAAGCAATAATAGAGAGCATAGACTTGGCAAACTGTCTAATGCTGCTCTCTCACCAAAGAAAGCCCCAGAAAAGTACTGAAGAGTTCGAGTGCAAGACCTGCAACCGTAAATTCTCGTCGTTTCAGGCTCTCGGTGGCCACAGAGCTAGCCACAAGAGGCCGAAGCTAGACGGAGACCTGCTCAAAGCACAGGCCAAAGCTCTGAGCTTAGGAAATAAACCCAAAATGCACGAGTGCTCTATTTGTGGCCAGGAGTTCTCTATTGGGCAAGCACTGGGAGGGCACATGAGGAGGCACAGAGCTGCCAACAACGAAGCCTTTCGGCCCTTAAACCAGGTTGTGATTGCTAAAGTCCCAGTTCTCGAGGGATCCAACAGTGCAAGGGTTTTGTGCTTGGATCTGAACTTGACGCCTCTCGAGAATGACTTGAAGTTGTTGTTAGGAAATATGACACCTAAAATTGAAGCCTTCTTCTG 503 0.4811 MNKRQRENHEAIIESIDLANCLMLLSHQRKPQKSTEEFECKTCNRKFSSFQALGGHRASHKRPKLDGDLLKAQAKALSLGNKPKMHECSICGQEFSIGQALGGHMRRHRAANNEAFRPLNQVVIAKVPVLEGSNSARVLCLDLNLTPLENDLKLLLGNMTPKIEAFF 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01844 167 SMART c2h2final6 86 108 IPR013087 -
Bva13g01844 167 SMART c2h2final6 38 60 IPR013087 -
Bva13g01844 167 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Bva13g01844 167 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Bva13g01844 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Bva13g01844 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Bva13g01844 167 Pfam C2H2-type zinc finger 86 110 - -
Bva13g01844 167 Pfam C2H2-type zinc finger 38 63 - -
Bva13g01844 167 Gene3D Classic Zinc Finger 33 62 - -
Bva13g01844 167 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 162 - -
Bva13g01844 167 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Bva13g01844 167 Gene3D Classic Zinc Finger 69 126 - -
Bva13g01844 167 PANTHER ZINC FINGER PROTEIN ZAT5 3 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01844 Bva-Chr13 15199594 15200448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01844 3 167 C2H2 Transcription Factor Family AT2G37430 46.667 4.41e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva13g01844 zf-C2H2_6 5.7e-10 CL0361