Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01836 ATGGCTTTCATATCTGGGATTCGGCGCTTTCTTCGAGATTCATCTGTTGCTTCGCCAATTCTTCGTTCCCAATTTACGATTCGCCTCAGTTCAACCCTGACATCTCCGAAGCTTTTCGTCAGCGGTCTGTCACGGCAGACAACAGATGCAAAACTGGAGGAAGCATTTACTCCGTTTGGGCAGTTGCTTGAAGCTAAGGTCATAACTGATAGAGCCACTGGAAGATCAAAGGGATTTGCTTTTGTAACATATTCAACCATAGAAGAAGCTGAAAAGGCCAAAGAAGGAATGAATGCCAAGTTTTTGGATGGATgggttatttttgttgatcCTGCCAAACCAAGAGAGCCCAGACCTCCTCCGCAATCACAGCCTCAGTCCTCTGAAACCGGTTTCACAGTCAACAAGACAATTGGATGGTGTGGTTG 428 0.4439 MAFISGIRRFLRDSSVASPILRSQFTIRLSSTLTSPKLFVSGLSRQTTDAKLEEAFTPFGQLLEAKVITDRATGRSKGFAFVTYSTIEEAEKAKEGMNAKFLDGWVIFVDPAKPREPRPPPQSQPQSSETGFTVNKTIGWCG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01836 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 104 IPR000504 GO:0003723
Bva13g01836 142 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bva13g01836 142 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 142 - -
Bva13g01836 142 MobiDBLite consensus disorder prediction 112 142 - -
Bva13g01836 142 SUPERFAMILY RNA-binding domain, RBD 34 132 IPR035979 GO:0003676
Bva13g01836 142 PANTHER NUCLEOLAR PROTEIN 8 1 142 - -
Bva13g01836 142 Gene3D - 22 125 IPR012677 -
Bva13g01836 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01836 Bva-Chr13 15143758 15145756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01836 27 125 Eukaryotic Initiation Factors Gene Family AT1G34140 36.036 3.74e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01836 - - qsu:111989558 196.052
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01836 13 15143758 15145756 Bva13g01836 13 15143758 15145756 ECH