Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g01835 | ATGGGAGAGGCAGCTATTTGTGTGGAAGTATTAGCAGATGGAAGGAGAGAAGATGAAGAGGTATCTAGAACAGAACTGAAACGGGACTGCCAATGTCTTGCTGATACTGAACTTGACCAGTCACCGAATAAGAAACAAGCAAAAGAAGTTTCAAATGATGACGTGCGTTCTGAGGTTACCAACCCCAATACTTTTCCGAAAGAGAATGCCTTAACTTTTCAAGATATCACTAGCCAACCTGCTGAATTGGAAAATATTAACCAGGCAGAGTGTGGTGAAGTTACGTCAACTTGCTTGGAGAATTCCAGTTCTGATGAGACCTTGAGTGATGGAGGGGCTAATCAGACTAACACTCCTCAGAATGAAAAGGATACAAGTATTACTACAATGACGTCCCGTGTTGTGCTGGAAATTCCCAAGCATGCTAGTACATCTGGGATCAGAAAGATCACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATTATCAGTCACGCGCTGCAATAGGCCAGCCTACTTATCAGCACCCTTATGGCTTCCAGGAAGATGACGAGGAACCCTATGGAAGGGCTCATAGCAATATGGAGGCATTAGAAAGCTCATATGGGATGGGCTATGTTCGAAATGGAGATTTTAACTTGTATGCTCGAAATATGGAATTCAGAATGTCAAAGAAGGTGGTTCCAAACTGCTATCCTACGAATGTCAAAAAGCTTTTGTCAACTGGTATACTTGACGGTGCTAGAGTGAAGTATATTTATCATGCAGGAGAGATCGAGCTTCCTGGGATTATTGAAGGAGGGGGATATTTGTGCGGCTGTTCAGACTGCAATTATTCGAGAGTTCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAGAATGGAAGACCAATATATAGTATTATACAGGAAATGAAAACTGCTCCACTCAGCTTATTGGATGAGGTTATAAAGGATGTGGTTGGTTCATCTGTCAATGAGGAGTCCTTCCAGGCTTGGAAAGCAACTCTGTTACAAAGTCATGCGAAAGTTGAAGCtgataaatattataacaCCAAGCTCATTGGCATGTCTCATACAAACATAAGTCAATCAATAGAAGGTATCAATAACTTGTCTCAGTCATATGCACTAAGTCCTGTTGAGCAGCAATTGTATGTGAAGCAGACAACTGATGAGCGGAAACGTGCTATGAAGAAGCCAAGTTCCTACACTTCTATCTCAGTTCCACAGCCAAAGAGAAATTCTGATGGTTGCACTAAGagaaggGACAATGATTTGCATAGATTACTTTTTATGCCAAATGGACTGCCTGATGGTGCTGAATTGGCTTACTATGTCAAAGGGCagAGATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTAGTTGTTGTGACAGAGAGATAAGCCCTTCTCAGTTTGAAGCCCATGCTGGAATGGCTGCCAGACGTCAACCTTACCGTCATATTTATACTTCCAATGGATTAACACTCCATGATATAGCTCTCTCGTTGTCAAATGGTCAAAATGTTACCACGGGAGATAGTGATGATATGTGTGCCGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCTTTTCATGCAGCCTGCTTGGGTTTAAATTGTGTTCCAGAAAGTTGTTGGCATTGTCAAGATTGCAGAAATAATGCTGGCACTGGCAGAGAATCTTCTGGTACAGGAAGGCCAATCATGATACGGTTGACACGAGTTGTTAAATCACCAGAATTTGAAATGGGTGGTTGTGTTGTTTGCAGGGAGCATGATTTCAGTGTTGCTAAATTTGATGAGCGAACAGTTATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTAGGGTGCTTGCGGGATAGTGGGTTATGTGAGTTGGAAGAACTGCCCAAGGATAAGTGGTTTTGTTGTGCTGATTGCAACAGAATATATGTGGCTCTACGGAGTTCGGTTTCCACTGGGGTAAAGACTGTACCAGCTTCCATATCAGACATAATAAACAGGAAGCATGAGGAGAGAGGATTATTTATCAATGGAGGCATGATTGATATCCAGTGGCGAATTCTAAGTGGTAAAAGTCGTTATCCAGAGCATTTGCCATTACTCTCACGGGCTGCTGCTATTTTCCGAGAGTGTTTTGATCCCATTGTTGCAGCCTCAGGCCGTGACCTGATTCCTGTCATGGTGTACGGGAGAAATATATCAGGCCAAGAATTTGGGGGAATGTATTGCGTTGTCTTAATTGTGAAGTCTGTTGTCGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGAAACGTTGCTGAGCTTCCGCTGGTAGCTACTAGTAGAGAGTATCAAGGAAAAGGTTATTTTCAAGTATTATTCTCTTGCATAGAGAGGTTGCTCTCTTCCCTCAACGTGGAAAAGCTGGTGCTTCCTGCAGCTGGTGACGCTGAATCCATTTGGACTAAGAAATTAGGCTTCCGAAAGATGAGCGAGGATCAGTTATCCAAATATCTGAGAGAAATGCAGCTAACCCTCTTCAATAAAACTTCAATGCTCGAGAAGACAGTGCAGCAGACAACAGAATG | 2642 | 0.4232 | MGEAAICVEVLADGRREDEEVSRTELKRDCQCLADTELDQSPNKKQAKEVSNDDVRSEVTNPNTFPKENALTFQDITSQPAELENINQAECGEVTSTCLENSSSDETLSDGGANQTNTPQNEKDTSITTMTSRVVLEIPKHASTSGIRKITFKFSKKKEDYDYQSRAAIGQPTYQHPYGFQEDDEEPYGRAHSNMEALESSYGMGYVRNGDFNLYARNMEFRMSKKVVPNCYPTNVKKLLSTGILDGARVKYIYHAGEIELPGIIEGGGYLCGCSDCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEMKTAPLSLLDEVIKDVVGSSVNEESFQAWKATLLQSHAKVEADKYYNTKLIGMSHTNISQSIEGINNLSQSYALSPVEQQLYVKQTTDERKRAMKKPSSYTSISVPQPKRNSDGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQRLLGGYKQGNGIVCSCCDREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLSNGQNVTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLNCVPESCWHCQDCRNNAGTGRESSGTGRPIMIRLTRVVKSPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDSGLCELEELPKDKWFCCADCNRIYVALRSSVSTGVKTVPASISDIINRKHEERGLFINGGMIDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAASGRDLIPVMVYGRNISGQEFGGMYCVVLIVKSVVVSAGLLRIFGRNVAELPLVATSREYQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREMQLTLFNKTSMLEKTVQQTTE | 880 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g01835 | 880 | ProSitePatterns | Zinc finger PHD-type signature. | 535 | 574 | IPR019786 | - | |
| Bva13g01835 | 880 | SUPERFAMILY | FYVE/PHD zinc finger | 530 | 578 | IPR011011 | - | |
| Bva13g01835 | 880 | MobiDBLite | consensus disorder prediction | 100 | 128 | - | - | |
| Bva13g01835 | 880 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
| Bva13g01835 | 880 | ProSitePatterns | Zinc finger PHD-type signature. | 609 | 664 | IPR019786 | - | |
| Bva13g01835 | 880 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 764 | 850 | IPR016181 | - | |
| Bva13g01835 | 880 | MobiDBLite | consensus disorder prediction | 406 | 435 | - | - | |
| Bva13g01835 | 880 | MobiDBLite | consensus disorder prediction | 34 | 69 | - | - | |
| Bva13g01835 | 880 | CDD | PHD1_AIRE | 534 | 574 | - | - | |
| Bva13g01835 | 880 | PANTHER | AUTOIMMUNE REGULATOR | 23 | 877 | - | - | |
| Bva13g01835 | 880 | Gene3D | - | 706 | 874 | - | - | |
| Bva13g01835 | 880 | MobiDBLite | consensus disorder prediction | 414 | 428 | - | - | |
| Bva13g01835 | 880 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 717 | 865 | IPR000182 | GO:0016407 | |
| Bva13g01835 | 880 | PANTHER | ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN | 23 | 877 | - | - | |
| Bva13g01835 | 880 | SMART | PHD_3 | 534 | 575 | IPR001965 | - | |
| Bva13g01835 | 880 | SMART | PHD_3 | 608 | 665 | IPR001965 | - | |
| Bva13g01835 | 880 | Pfam | Tify domain binding domain | 468 | 517 | IPR032308 | - | |
| Bva13g01835 | 880 | Pfam | Tify domain binding domain | 263 | 318 | IPR032308 | - | |
| Bva13g01835 | 880 | ProSiteProfiles | Zinc finger PHD-type profile. | 606 | 667 | IPR019787 | - | |
| Bva13g01835 | 880 | SUPERFAMILY | FYVE/PHD zinc finger | 606 | 661 | IPR011011 | - | |
| Bva13g01835 | 880 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 605 | 667 | IPR013083 | - | |
| Bva13g01835 | 880 | ProSiteProfiles | Zinc finger PHD-type profile. | 532 | 577 | IPR019787 | - | |
| Bva13g01835 | 880 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 522 | 592 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g01835 | Bva-Chr13 | 15134439 | 15142817 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g01835 | 1 | 880 | PHD Transcription Factor Family | AT3G53680 | 52.790 | 0.0 | 917 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva13g01835 | 13 | 15134439 | 15142817 | Bva13g01835 | 13 | 15134439 | 15142817 | ECH |