Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01826 ATGGCGGCATCGAGGCGCCTCCGGGACCTGCAAACCCATGCGGGAAACAAGATCTGCGTTGATTGTTCCCAGAAGAATCCTCAATGGGCTTCCGTTTCCTATGGAGTATTCATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGTCTTGGTGTCCATATCTCCTTCGTTCGATCTGTCACCATGGATTCGTGGTCCGAGATCCAGATCAAGAAAATGGAAGCTGGTGGTAATGAACAGCTTAATGCCTTCCTTGCCCAGTATGGGATCCCCAAGGAGACTGATATTGTTACAAAGTATAATAGCAATGCTGCTAGCGTATATAGGGATCGAATTCAGGCCCTTGCCGAGGGTCGACCATGGCGGGATCCACCAGTTGTCAAGGAGAACCTTGGCTCTGGCAAGAGTAGGCCCCCTTTGGCACAAAGCAGTGCCAGGAGTAATGGAGGGTGGGATAATTGGGATAACGATGATGGGTTCAGGTCTTCCAACGATATCAGGCGAAACCAGTCGACGGGGAATTTTAGAGGGACGAATGGTGACGGTGCCGGAGGCATTCCCGCCAGATCTAGGTCCACTGAGGATATCTATACGCGCTCGCAGTTGGAGGCCTCCGCTGCTAATAAGGAGAGCTTTTTTGCTGGGGTGATGGCCGCAAACGAATCACGACCAGAAGGGATTCCCCCTTCTCAAGGAGGCAAGTATGTGGGCTTTGGTTCTAGTCCAACGCCTTCCCAGAGGAATAACAATCCACAAGATGACGTTTTCTCTGTTGTTTCTCAGGGATTTGGTAAATTATCTTTAGTTGCTGCATCTGCAGCTCAATCTGCTGCTAATGTTGTTCAACAAGGCACTAAGGACATCACTGCTAAGGTAAGAGATGGTGGTTATGACTACAAGGTCAATGAAACTGTCAATGTTGTCACCCAGAAGACATCAGAGATTGGACATAGGACATGGGGGATGATGAAAGGGGTCATGGCTTTAGCTTCACAGAAGGTTGAAGAATACACTAGAGAGAACTCAAATTGGAAGCCTGATAATTGGCAacgaaatgaaaatgatagaaatggTTACTATCAGGATTTCAATCTAGATAACAAAGGCTGGAATTCTTCTACCGGCAGAGGGCAGTCTTCATCAAGTGGGCAATCTAATACTTACAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATACTAGGAAGGAAGAATCAGCAAAAGGATCAGCTCCCCACTCATCAGGTGGGCAGTTCAATACTTACAACACCAGCTCTTGGGATGATTGGGGCCACAAAGATACTAGGAAGGAACAACCAGCTAAAGAATCAGCTCACCGTAACAGTGATGCTTGGGCTGGCTGGGAAGATGCCAAAGATGATGGATATGATGATTTCTATGACAATGCATCTAATAAAAATGCTATTGGTCACAATGGGAAATCAGATGCTACCTGGACAGGAGGAGGCTTTCTCTA 1475 0.4712 MAASRRLRDLQTHAGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNEQLNAFLAQYGIPKETDIVTKYNSNAASVYRDRIQALAEGRPWRDPPVVKENLGSGKSRPPLAQSSARSNGGWDNWDNDDGFRSSNDIRRNQSTGNFRGTNGDGAGGIPARSRSTEDIYTRSQLEASAANKESFFAGVMAANESRPEGIPPSQGGKYVGFGSSPTPSQRNNNPQDDVFSVVSQGFGKLSLVAASAAQSAANVVQQGTKDITAKVRDGGYDYKVNETVNVVTQKTSEIGHRTWGMMKGVMALASQKVEEYTRENSNWKPDNWQRNENDRNGYYQDFNLDNKGWNSSTGRGQSSSSGQSNTYSSSSWDDWDHKDTRKEESAKGSAPHSSGGQFNTYNTSSWDDWGHKDTRKEQPAKESAHRNSDAWAGWEDAKDDGYDDFYDNASNKNAIGHNGKSDATWTGGGFL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01826 491 CDD ArfGap_ArfGap1 3 117 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 221 249 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 337 491 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 235 249 - -
Bva13g01826 491 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 413 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 118 193 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 392 408 - -
Bva13g01826 491 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 412 491 - -
Bva13g01826 491 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Bva13g01826 491 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Bva13g01826 491 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Bva13g01826 491 SUPERFAMILY ArfGap/RecO-like zinc finger 5 116 IPR037278 -
Bva13g01826 491 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Bva13g01826 491 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 412 491 IPR044519 GO:0005096|GO:0016192
Bva13g01826 491 MobiDBLite consensus disorder prediction 410 427 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 428 466 - -
Bva13g01826 491 MobiDBLite consensus disorder prediction 342 391 - -
Bva13g01826 491 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Bva13g01826 491 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Bva13g01826 491 Pfam Putative GTPase activating protein for Arf 5 106 IPR001164 GO:0005096
Bva13g01826 491 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 413 IPR044519 GO:0005096|GO:0016192
Bva13g01826 491 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01826 Bva-Chr13 15096899 15100925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01826 5 91 C2H2 Transcription Factor Family AT4G21160 48.864 4.56e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01826 K12492 - gmx:100792658 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02688 04 23565875 23568855 Bva13g01826 13 15096899 15100925 BWGD
Bva13g01826 13 15096899 15100925 Bva13g01826 13 15096899 15100925 ECH