Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01811 ATGTCCAGAATTGACGCCATGACAGGACTGGTGGCTGAAATTCCTGTGCTAAAGAGAGAAATAGCTGATCTGAAGGCAAAGGTCAACCAAGAGGAGGATCAAACTGAATCCAGTGATGATACTGATGCAACTTTGGCTTCCAAGGAGAAGGAAGAGGACAGTCTGGATGAGGACTACTTTCCAGTTTATAGATCAAAAGGACCCATAAACCATGCTGCTGCAACTCTCAACAGAGGCAATATGAATAATCACTGTGTTCcagattttgaaattgaaatggatGATGATGAGTACCCGATACCCACATCCTCTGGATTAACTCGCCTAAAGAATCCCTTCGAGCCAGACGACGATATCATGGAGTTGTTTTGGCAAAACGGCCAGGTGGTGATGCAGAGTCAGAACCAACGATCCGTTAAAAAACAACCCCCGGCGGGGCCCTCCACGGCCAGGGAGATTCGATCCTCACAACCAACAGCAGAAAACCAACATCTATTTATGCAAGAAGATGAACTCACTTCTTGGCTTCACTATCCCTTCGTTGATGAGAATCCCTTGGATCAAAATTTTTACGCCGACCTACTTTTCCAGCCGCCCACCACTGTTAACAACAACAGTGCCATGCAGACCCCTGTTCGTACGTCTCAGATAACAGATCTCCGGCAGCCGCCAAGGTCGGTGGCTCCGCTCCCGCCGATACTGCCCGCGGGGAGAACGGAGCAGGTGCAGACGAGGATTCAGAACTTCGCTTACTTCTCGAAGCACAATGTAAGACTTCGACCAGGGCCGTCAAGTTTGAAGACAAAAGCGAGGGAATCAACGGTTGTAGATTCAAGCATCACGCCGAATGCGGCGGCGGATTCCATGGCATCGGAGACTGAAAGAAACACGGCGGAGCCAACGGACAAAGATGGCGGCCGTGGGAGCATGAGCAATGCTGGAAAAGCGGCAGCTTCTGCCGGCGGATGTACAAGAGGGAAGGAAGTGACGAAGTGCGAGATCACAGTGTCGTGTTCGAGTGGCAGAGCTGAACCGGCACACCGAACGGCGGCGGAGGATCGGAAGCGGAAGGGTCGGGAACCCGACGACTCCGAGTGTCAAAGCGAGGATGTTGATTTTGAATCTGCGGATGCGAAAAAACAAGTTCGTGGATCAACGTCTACGAAGAGATCTCGCGCAGCAGAGGTCCATAATCTCTCAGAGAGGAGACGTCGAGATAGGataaatgaaaagatgaaAGCTTTGCAAGAACTTATACCTCGGTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAGTTTCAAGTGCAGATGATGTCTATGGGATGTGGGATGGTCCCTATGATGTTTCCGGGAATTCAACAGTATATGCCACCGATGGGAATGGGGATTGGGATGGGTATGGGCATGAACAGGCCACTAATGCCATTTCCCAATATCTTAGCTGGTTCGAGTTTGCCTGCAGCCACTGCAGCTGCtcatttgggaccaaggatccCTATGCCTCCTTTCCACATGCCTCATGTTCCTGCACCAGATAGCTCCAGAATGCAAGCACCACAGCAATCAGATCATATGCTTACATCACCTGGGACATCTAATCCTAACCAGTCACGGATCCCATATTTCACTGATCTTTATCAACAATACCTTGGTCCCCAGCAGATACAAAAACCAACGCAGAGTCAGGCAATAAACCAAGGGGGCCAGGACAATCCAGAAAATCATCAATCAGAAGGAATATG 1772 0.4836 MSRIDAMTGLVAEIPVLKREIADLKAKVNQEEDQTESSDDTDATLASKEKEEDSLDEDYFPVYRSKGPINHAAATLNRGNMNNHCVPDFEIEMDDDEYPIPTSSGLTRLKNPFEPDDDIMELFWQNGQVVMQSQNQRSVKKQPPAGPSTAREIRSSQPTAENQHLFMQEDELTSWLHYPFVDENPLDQNFYADLLFQPPTTVNNNSAMQTPVRTSQITDLRQPPRSVAPLPPILPAGRTEQVQTRIQNFAYFSKHNVRLRPGPSSLKTKARESTVVDSSITPNAAADSMASETERNTAEPTDKDGGRGSMSNAGKAAASAGGCTRGKEVTKCEITVSCSSGRAEPAHRTAAEDRKRKGREPDDSECQSEDVDFESADAKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQFQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMNRPLMPFPNILAGSSLPAATAAAHLGPRIPMPPFHMPHVPAPDSSRMQAPQQSDHMLTSPGTSNPNQSRIPYFTDLYQQYLGPQQIQKPTQSQAINQGGQDNPENHQSEGI 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01811 590 CDD bHLH_AtPIF_like 392 455 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 26 58 - -
Bva13g01811 590 Gene3D - 387 450 IPR036638 GO:0046983
Bva13g01811 590 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 83 586 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 133 160 - -
Bva13g01811 590 Coils Coil 398 418 - -
Bva13g01811 590 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 83 586 IPR031066 -
Bva13g01811 590 MobiDBLite consensus disorder prediction 215 234 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 257 324 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 508 590 - -
Bva13g01811 590 Pfam Helix-loop-helix DNA-binding domain 396 442 IPR011598 GO:0046983
Bva13g01811 590 SMART finulus 398 447 IPR011598 GO:0046983
Bva13g01811 590 MobiDBLite consensus disorder prediction 42 58 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 267 295 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 346 364 - -
Bva13g01811 590 Coils Coil 14 34 - -
Bva13g01811 590 MobiDBLite consensus disorder prediction 339 401 - -
Bva13g01811 590 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 441 IPR011598 GO:0046983
Bva13g01811 590 MobiDBLite consensus disorder prediction 524 590 - -
Bva13g01811 590 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 390 458 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01811 Bva-Chr13 15023084 15033870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01811 83 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.750 1.35e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva13g01811 HLH 7.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01811 - - gmx:100797225 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02701 04 23613588 23618294 Bva13g01811 13 15023084 15033870 BWGD
Bva13g01811 13 15023084 15033870 Bva13g01811 13 15023084 15033870 ECH