Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01785 atggacgaacctggttcaGAAACCGTCGAAAACTCGACTATATCGGGAGAAGCACTGTCATCAGTACACAACTCCAATGGAGGAGTAGCTCAGCAAACTCCTGAGCAACTCGTGGCTAGGTCCATAGCTCCAGTGAAGAAGGAGTTCCTTCTTCCTCCACCTCTTCGAACTTCTTCTACTAGCCAAAACGATGACGTTTCCGATGCTAAGGATAAGACTCCAGTTCATTCAGGATTGTCGAAGGAGAAGAAGTCCAGGCGCCAGCTCAAACGGGAGCGCCGTCAGgaaCAGAAGTCTGCACGGAACCTCTGTCCAGAAATAGCAAAGACAGGACATATCAGTTCATGTCCTTATAATGATAAATGTCGCTTCAGCCATGACTTGGAAGGCTTCAAGGCTCAGAAACCAGCTGATCTGGAGGGAGAGTGTCCTTTCTTTAAATCTGAAGGTTCTTGCCCTTATGGCCTTGCATGTAGATTCTCAAGTACACATATAAACGGTGTGCCTTCAGGCAATCTGAACAGTCAGAAAAAAAGTTCTGAGATCAATGGGTTGAACAAAGATGTTCAAAAGCTCTTGTGGAAAAATAAGATGAGCTTCCCCAAGGCAGATGCCCAACTCAAGGATCTTGGGCTCGTGggaCCGCATGGGAAGTCAAAACGGAATTTTTGTGAAGACAAGGAAGGTGACAACTCTGATTCAACTAAGTGCCCCCTTGCTGATGATAAGGGCTCTTGTGAAGTAAACTGTGACTCAGGTTCCAAGTTTGAATGCTCCCTAGAAGATATAAAAGAGGATGATACAGACATAAAAGTTGAAGCTGATGTACATTGTCcccagaaaagaagaaaaactggaGAAGATTCTGATGCAAGTGTTGCTGAGGATATTATTGAGGGAAGCTGCATACAAGCCAAACCCGAAGCTAAACCTGAAGCTGCAAGTGATGTCATACCCGTAGAAACAGATAGCAGCCTTAAGTTACACCCGCGTGAAAAGATGCTTATTGATTTTAGGGAGAAGTTGTATCTGGCACCTTTGACCACGGTTGGAAATCTCCCTTTCAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCTATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCGTTGCTGAGGCGTCATTCATCTGAAGATTTATTTGGTGTACAAATATGTGGGGCCTATCCAGATACTGTGGCTCGAACTGTTGAACTAATAGAGCAGGAATGTACAGTAGACTTTATTGATATAAACATGGGTTGTCCAATTGATATTGTAGTGAATAAGGGAGCTGGATCAGCTCTTCTCACTAAACCAATGCGGATGAAAAGTATTGTGGAAGTAGCTTCAGGCACAGTGGATAAACCAATAACTGTCAAGGTACGGACAGGttattttgaaggaaaacAACGTATCGATTCTGTTATTACAGACATTGGCTCTTGGGGAGCCAGTGCGATAACCATACATGGTAGGTCACGTCAACAACGCTATAGCAAGCTTGCGGACTGGGACTACATATACAAGTGTGCCGGAAAGGCCCCCAGCACTTTGCAAGTAGTGGGCAATGGAGatgttttttcatttgtagACTGGAACAACCACAAGGCAGAATGGCCCGAGCTTGCTTCATGCATGATTGCCCGTGGAGCATTGATTAAGCCTTGGATATTTACTGAGATCAAGGAACAGAGGCACTGGGACATTAGTTCTGGGGAACGATTAAATCTCTTGAAAGATTTTGTACATTTTGGCCTTGAACACTGGGGTTCTGACACAAAAGGAGTGGAGACAACTAGGCGATTCTTGTTGGAATGGCTAAGCTACACGTTTAGATACATTCCTGTTGGGCTCTTAGATGTTATTCCACAGAGAATAAACTGGCGTCCACCATCTTACTATGGGCGTGATGACCTAGAGACACTAATGGCCTCAGACTCTGCAGCTGATTGGATTCGGATATCGGAGATGTTGCTTGGCAAGGTTCCAGATGGCTTTACCTTTGCGCCAAAGCATAAATCAAATGCTTATGATAGAGCTGAAAATGGTTG 2081 0.4315 MDEPGSETVENSTISGEALSSVHNSNGGVAQQTPEQLVARSIAPVKKEFLLPPPLRTSSTSQNDDVSDAKDKTPVHSGLSKEKKSRRQLKRERRQEQKSARNLCPEIAKTGHISSCPYNDKCRFSHDLEGFKAQKPADLEGECPFFKSEGSCPYGLACRFSSTHINGVPSGNLNSQKKSSEINGLNKDVQKLLWKNKMSFPKADAQLKDLGLVGPHGKSKRNFCEDKEGDNSDSTKCPLADDKGSCEVNCDSGSKFECSLEDIKEDDTDIKVEADVHCPQKRRKTGEDSDASVAEDIIEGSCIQAKPEAKPEAASDVIPVETDSSLKLHPREKMLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITVKVRTGYFEGKQRIDSVITDIGSWGASAITIHGRSRQQRYSKLADWDYIYKCAGKAPSTLQVVGNGDVFSFVDWNNHKAEWPELASCMIARGALIKPWIFTEIKEQRHWDISSGERLNLLKDFVHFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVIPQRINWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01785 693 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Bva13g01785 693 SMART c3hfinal6 99 128 IPR000571 GO:0046872
Bva13g01785 693 ProSitePatterns Uncharacterized protein family UPF0034 signature. 425 443 IPR018517 GO:0008033|GO:0017150|GO:0050660
Bva13g01785 693 MobiDBLite consensus disorder prediction 65 82 - -
Bva13g01785 693 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 41 693 - -
Bva13g01785 693 Gene3D - 93 170 - -
Bva13g01785 693 CDD DUS_like_FMN 341 576 IPR035587 -
Bva13g01785 693 Coils Coil 79 99 - -
Bva13g01785 693 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 41 693 - -
Bva13g01785 693 MobiDBLite consensus disorder prediction 7 36 - -
Bva13g01785 693 MobiDBLite consensus disorder prediction 49 104 - -
Bva13g01785 693 SUPERFAMILY FMN-linked oxidoreductases 341 654 - -
Bva13g01785 693 MobiDBLite consensus disorder prediction 1 36 - -
Bva13g01785 693 ProSiteProfiles Zinc finger C3H1-type profile. 98 129 IPR000571 GO:0046872
Bva13g01785 693 ProSiteProfiles Zinc finger C3H1-type profile. 142 167 IPR000571 GO:0046872
Bva13g01785 693 Pfam Dihydrouridine synthase (Dus) 344 578 IPR035587 -
Bva13g01785 693 Gene3D Aldolase class I 336 579 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01785 Bva-Chr13 14421700 14426838 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva13g01785 Dus 7.3e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01785 K05544 - gmx:100783494 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01785 13 14421700 14426838 Bva13g01785 13 14421700 14426838 ECH