Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01765 ATGACACGAACAAGTGATGACTCCAAACTTGAAAAGAGAGACtgtgaaaagagaaagaaaagcaaagataAACCATTAGCCCAGCACCAGTTTCGCCAACGAACCAGCCTCCATTTCAGTGCTTCTTCCGCTTTGCACGGTTTTCCATCTTCGTCTTTGCCATTTTCagAAATGGAGATTGCGGTAGCGAGAGCGTTCAAATCAAGTCTGCGCAGAGAATTGGCTTTCATGAAATCGACCCAGCAAGTGTTTTGCGATGATGACTATTGGTGCTTGAATCCCAATAATGGGGTTTCCGGTGAGGATTTCTCGGTGGATGACTTGTTTGATTTCTCCAACGGTGAATGCCAACCCGGCCCTGTTGGTGTTGGGAACGATGATGATTACGAAGAGGAAGACGAAGAAAAAGACAGCTTCTCTGTTTCCTCCCAGGACCGCGGCGAAGATGATAGCAGCTCCGGTAGTGTTTCCGGCACCGCCGATTCTGAGTCCTTCTTTGCCCGCGAACTCGCCGTTCCGatGGATGATTTGTTAGAACTGGACTGGGTTTCTCACTTTGTGGATGATTCTCTCCCGGAGAGCTTGCTGTTGTACCCGGTTCATTCAGAGCAAACAAGGAAAAGGGCTGAACCGGAACCAGAAGCTGAGCCGGATGCAACGAAAACTCCTTGTTTTCCTTCGAAAGTACCCGTTAAAGAGAGAAGCAGAAAATGCCGAAAAGCTAAGGCTAGCCCCTGGTCGTTCATCCCATTACTTTCCGGTTCAGGGTCGGGTCATTCTTCGCCGTCTTTATGTTCTTCTGGGCTTTCGTCGACGCCGGCTCTCATTTTCGCCGGCACCGTCCCGAACTTGGAATTATTACACGGCCATGGCGAACCGGCGGctaagaaacagaaaaaaaagcCGGAGGCCCAATTTCAGCGTCGATGCAGTCACTGCCAGGTGCAGAAAACACCACAATGGAGAACCGGTCCACTTGGCGCCAAAACCCTTTGCAACGCATGCGGTGTTCGTTATAAGTCCGGTCGGCTTTTTCCAGAGTACAGACCGGCCTGTAGTCCAACCTTCTCCGGCGAAATTCACTCAAACAGCCACCGTAAAGTGTTAGAGATGAGAAGGAAGAAGGTGACGGCTGGACCGCAGTCCGGGTTGACCTA 1157 0.4892 MTRTSDDSKLEKRDCEKRKKSKDKPLAQHQFRQRTSLHFSASSALHGFPSSSLPFSEMEIAVARAFKSSLRRELAFMKSTQQVFCDDDYWCLNPNNGVSGEDFSVDDLFDFSNGECQPGPVGVGNDDDYEEEDEEKDSFSVSSQDRGEDDSSSGSVSGTADSESFFARELAVPMDDLLELDWVSHFVDDSLPESLLLYPVHSEQTRKRAEPEPEAEPDATKTPCFPSKVPVKERSRKCRKAKASPWSFIPLLSGSGSGHSSPSLCSSGLSSTPALIFAGTVPNLELLHGHGEPAAKKQKKKPEAQFQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRKKVTAGPQSGLT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01765 385 Gene3D - 288 377 IPR013088 GO:0006355|GO:0008270
Bva13g01765 385 SMART GATA_3 304 358 IPR000679 GO:0006355|GO:0043565
Bva13g01765 385 MobiDBLite consensus disorder prediction 1 28 - -
Bva13g01765 385 MobiDBLite consensus disorder prediction 203 217 - -
Bva13g01765 385 MobiDBLite consensus disorder prediction 145 160 - -
Bva13g01765 385 ProSitePatterns GATA-type zinc finger domain. 310 335 IPR000679 GO:0006355|GO:0043565
Bva13g01765 385 CDD ZnF_GATA 309 366 IPR000679 GO:0006355|GO:0043565
Bva13g01765 385 MobiDBLite consensus disorder prediction 202 227 - -
Bva13g01765 385 PANTHER GATA TRANSCRIPTION FACTOR 58 384 - -
Bva13g01765 385 MobiDBLite consensus disorder prediction 114 160 - -
Bva13g01765 385 Pfam GATA zinc finger 310 343 IPR000679 GO:0006355|GO:0043565
Bva13g01765 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 301 365 - -
Bva13g01765 385 ProSiteProfiles GATA-type zinc finger domain profile. 308 340 IPR000679 GO:0006355|GO:0043565
Bva13g01765 385 PANTHER GATA TRANSCRIPTION FACTOR 58 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01765 Bva-Chr13 14278715 14281183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01765 65 384 C2C2-Gata Transcription Factor Family AT5G66320 43.620 2.18e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva13g01765 GATA 1.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01765 - - adu:107476627 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01765 13 14278715 14281183 Bva13g01765 13 14278715 14281183 ECH
Bva13g01765 13 14278715 14281183 Bva14g02258 14 19289604 19291151 ECH