Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01757 ATGCTGAGGCAAGAATCACAAGAGTTAGTGAAGGTTGGTATCAAGTGCCAGGGCTGTGGGAACAGCGCGAAGAGGGATTGCCAGCACTCAAGGTGCAGAACTTGCTGCAGGAACCTTGGGCTTGAATGCGAAACCCATGTCAAGAGCACTTGGAGGACTTCTCCGGCCAAGAAGCGCCAGAGGGAGCAGCAGCAGCCCCTTCAGGGCGATAACCCTGGGAAGAGGCAAAAACTGAATCCACCATCAGgTTTTGAGGAGGAGAATCATTTTCCTGAAGCATTGAGTACCATAGGGATATTCCGTCGCCTTCGGTTGCACTCTGGGGATGGTGCAATAGATGAAGAGGCCTATCAAGCAACTGTGAACATTGGAGGGCATTCATTTTCTGGAATTCTCTATGATCAAGGCCCTCCAAAGCTCCAAGGTGTTGAAGCTGCTAATGACAACGCCATAACCAATCCTCAGCAGCAGCAACGTCGCGACAAAGCAGCCAAAACCAGTCTTGGTGGTGCAATTGTGGCTTCATCATCAGCTGCTACTGCTCCTGCTCCTTCTCCTCCTACTGCTTCTGGTCTCTCTCTCCTTCAATATCATCAGCAAACATATCCACCTACGTTTAATTCTTTCAACGAGCCGCTTCCACCGCCTTTTTTCGACctaagaaaatg 668 0.494 MLRQESQELVKVGIKCQGCGNSAKRDCQHSRCRTCCRNLGLECETHVKSTWRTSPAKKRQREQQQPLQGDNPGKRQKLNPPSGFEEENHFPEALSTIGIFRRLRLHSGDGAIDEEAYQATVNIGGHSFSGILYDQGPPKLQGVEAANDNAITNPQQQQRRDKAAKTSLGGAIVASSSAATAPAPSPPTASGLSLLQYHQQTYPPTFNSFNEPLPPPFFDLRK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01757 222 MobiDBLite consensus disorder prediction 174 196 - -
Bva13g01757 222 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 89 137 IPR006511 -
Bva13g01757 222 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 15 53 IPR006510 -
Bva13g01757 222 MobiDBLite consensus disorder prediction 50 88 - -
Bva13g01757 222 Pfam Domain of unknown function (DUF702) 13 137 - -
Bva13g01757 222 MobiDBLite consensus disorder prediction 203 222 - -
Bva13g01757 222 PANTHER PROTEIN SHORT INTERNODES 8 176 - -
Bva13g01757 222 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 176 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01757 Bva-Chr13 14188445 14189621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01757 9 150 C2H2 Transcription Factor Family AT2G21400 42.384 2.30e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bva13g01757 DUF702 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01757 - - gmx:102662493 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01757 13 14188445 14189621 Bva13g01757 13 14188445 14189621 ECH
Bva06g01949 06 13186024 13188637 Bva13g01757 13 14188445 14189621 ECH
Bva10g00873 10 6680667 6682373 Bva13g01757 13 14188445 14189621 ECH