Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01728 ATGGGCGAAGAAAAGCAAGGTAGTGTACCGGTTTTGCCATGGATGCGAGATCCTGTTGATGTCGCTCTCTGTCAGGAATGCCCTCTTGATGAAGTTCCTTGCCTTCACCCTAGGTTGAAGTTGGCATTGCAGAAAATGGGCATCTCTAAGCTCTTCCCTGTACAAGCTGCAGTGTGGCTAGAAACAGTTGGGCCTGGTAATTTTGATCGAGACCTTTGTATAAATTCGCCCACTGGAAGTGGGAAAACCTTAGCTTATGCCTTGCCAATTGTGCAAATGCTATCAAATCGAGTTGTAAAATGCCTGCGTGCTTTAGTGGTGGTGCCTACTCGTGATCTGGCCTTACAGGTTAAAGAAGTTTTTGATGCTATTGCATCTCCACTAGGCTTATGTGTTGGCTTGGCTGTTGGTCAATCTTCAATATCTGATGAAATTTCTAAGCTCGTGACCGTACCTGAATATGATGCTGGCATGTCTTTTGATCCAGATGATATTTCACTCGGGTTGCAACTTGGATTCCAAAGTAAAGTGGACATATTGGTTGCAACTCCCGGAAGGCTGATGGATCATATAAATACCACCAGAGGTTTTACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTACTCAGGGAGTCGTACCAGTCCTGGCTACCTACAGTGCTTGGATTGACTCAATTTAATGATGATCATATTCTTACAGTGgcaaattcttttcttcctaaTGCTTTTGGTCCATTAAGAACTAGAAGAACATGTGGTATTGAGAGGGGGTTCAAGGATAAACTGTACCCCAGACTTGCAAAGATGGTTCTATCTGCAACAGTAACCCAAGATCCAGGAAAGCTTGTCCAGCTTGATTTACATCACCCTTTGTTCTTGAAAGCTGGCCTAATGCGTTATCAGTTACCAGAAAACTTGGAATCATACAAACTGatTTGTGAAACACAACTCAAACCCTTGTATTTGGTTGCGCTATTGAAAACCTTGGAAGGAGAAAAATGCATAGTTTTTACAAAATCAGTGGTTTCAACACATCGTCTGTGCACATTAATGAATTGTTTtaacaatttacaaattaatatcaaGGGCTATTCTAGTCTTCAGACCCAACGTATAAGAAgCAAGACATTGAAAGAATTCCGGAAAGGGGAGTTTCAAGTGCTTGTAAGTTCTGATGCCATGACTAGAGGAATGGATGTCGCCGGGGTGAGAAATGTCATTAATTATGATATGCCCAAATACATAAAGACTTATGTTCATCGGGCTGGTAGGACGGCGAGAGCCGGCCAGACCGGACGTTGCTTCACATTGATTTGCAAAGATGAGGTTCGGCGATTCAAGAAATTGTTGCAGAAGGCTGAAAATAGTTCTTGCAGTGACCACACTCTTCCCTCCAGTTTGATTGAAGCGCTTGACGCTACTTATCAATCAGCTTTGGAAAAATTTAGAGAGATAATTTCAGAAGAACGAAAAAAATCTAAGAGTATTTCCTCTCAATCGAGccaagagaaaggaaaaaggcaGAAGAGTGAATA 1550 0.4045 MGEEKQGSVPVLPWMRDPVDVALCQECPLDEVPCLHPRLKLALQKMGISKLFPVQAAVWLETVGPGNFDRDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLCVGLAVGQSSISDEISKLVTVPEYDAGMSFDPDDISLGLQLGFQSKVDILVATPGRLMDHINTTRGFTLEHLYYLVVDETDRLLRESYQSWLPTVLGLTQFNDDHILTVANSFLPNAFGPLRTRRTCGIERGFKDKLYPRLAKMVLSATVTQDPGKLVQLDLHHPLFLKAGLMRYQLPENLESYKLICETQLKPLYLVALLKTLEGEKCIVFTKSVVSTHRLCTLMNCFNNLQINIKGYSSLQTQRIRSKTLKEFRKGEFQVLVSSDAMTRGMDVAGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLICKDEVRRFKKLLQKAENSSCSDHTLPSSLIEALDATYQSALEKFREIISEERKKSKSISSQSSQEKGKRQKSE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01728 516 CDD SF2_C_DEAD 311 443 - -
Bva13g01728 516 MobiDBLite consensus disorder prediction 493 516 - -
Bva13g01728 516 PANTHER RNA HELICASE 29 479 - -
Bva13g01728 516 SMART helicmild6 353 434 IPR001650 -
Bva13g01728 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 298 IPR014001 -
Bva13g01728 516 Pfam DEAD/DEAH box helicase 53 286 IPR011545 GO:0003676|GO:0005524
Bva13g01728 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 456 IPR027417 -
Bva13g01728 516 SMART ultradead3 47 314 IPR014001 -
Bva13g01728 516 CDD DEADc_DDX51 39 298 - -
Bva13g01728 516 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 29 479 - -
Bva13g01728 516 Pfam Helicase conserved C-terminal domain 323 434 IPR001650 -
Bva13g01728 516 Gene3D - 309 516 IPR027417 -
Bva13g01728 516 Gene3D - 26 301 IPR027417 -
Bva13g01728 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 476 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01728 Bva-Chr13 13506088 13514378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01728 71 449 Eukaryotic Initiation Factors Gene Family AT3G13920 23.316 2.34e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01728 K14807 - cit:102616133 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01728 13 13506088 13514378 Bva13g01728 13 13506088 13514378 ECH