Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01715 ATGAGACTCTCTTCTGCTGGTTTTAGTCCTCCACCTCAGGAAGGAGAAAAGAGAGTTCCAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCTTTACCAGCCGTTGGAAGCCGTGTTGTCTATTTTCCACAAGGTCATAGTGAGCAGGTTGCTGCATCGACAAACAAGGAAGTGGATGGGCACATTCCTAACTACCCAAGCTTAGCTCCCCAGCTAATATGTCAACTTCATAATTTGACTATGCATGCTGATGTTGAGACTGATGAAGTATATGCACAAATGACCTTACAACCTTTAAATCCTCAAGAGCAAAAGGAGGCATATCTTCCAGTAGAGTTGGGTACTCCCAGTAAACAGCCAACAAACTACTTCTGTAAAACTTTGACAGCCAGTGACACGAGCACTCATGGGGGATTCTCTGTTCCCCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGATTTCTCCCAACAACCTCCTGCTCAAGAATTAATCGCAAGGGATTTGCATGGTAATGAATGGaaattcaaacatattttCCGAGGCCAGCCCAAAAGGCATCTTCTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTCATCtgGAACGAAAGGAATCAATTTCTGCTTGGTATCAGACGCGCTAATCGACCGCAAACAGTGATGCCTTCATCAGTGTTATCAAGTGATAGCATGCATTTCGGGCttcttgctgctgctgctcATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCGTCAGAATTTGTTATACCCTTAGCAAAGTATGTTAAAGCTGTGTATCATGCACGAGTTTCGGTTGGCATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCAAGTGTGAGACGATACATGGGCACTATAACTGGCATCAGTGACTTGGATCCAGTTCGGTGGCCAAATTCACATTGGCGCTCAGTTAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAAGCAACCTAGAGTGTCCCTTTGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCGTTCCCACTCAGGCTTAAGCGACCGTGGCCTCCAGGACTGCCATCTTTCCATGGCATGAAGGATGAAGATTTGGGCATGAATTCTCCACTATTGTGGCTTCGAGACACCACGGATGGAggactttcttttaatttccaGGGAATTGGGGTCAGTCCTTGGATGCAGCCAAGGCTTGAACCTTCCATGCTGAACTTGCAAACTGATATGTACCAAGCTGTGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCCAAACAGCATCCTGCAGCCCTTCTTCAATTTCAGCAATCACAGAACTTCCCCAACAGGACTGCTTCTTTGATGCAAGCCCAGATGTTGCAGCAGTCTCAACCTCAGCAGGTGTTCCAAAGCAATCAAGAGCATCATCAACATCCGTCTCAATCCCAGGCTCAAACTCAGACACATCTTCAGCTGCAACTTCAGCATCAGAACTCATTCAACAATCAGCATCAGTGTCATCATCAGCAACAACAGCAAGTGGTTGATCGTCAGCAGATTCCAAGTGCTGTCTCTACAATGTCTCAGCTTGTTTCAGCACCTCAACCTCAGTCACCCCCTGTGCAAGCTATCTCTTCTTTGTGTCACCAACAAAGCTTTTCCGAGCCAAATGGGAACCCTGTAACTTCCGCTATTGCCTCTCCCCTGCACAGTATCTTGGGTTCATTTCCCCAGGATGAAACTTCCCAACTTCTCAACCTTTCTAAAACTAGCTCCTGGATACCTGTTCAAACCTCTACTAATAGACCAAGAAGGCACTTGGGGCAATGTCAAGGCACACTCTCACAGAATTCTATTGCATTGCCACCCTTTCCTGGCAGGGAGTGCCCAATAGACCAAGAAGGCAGCACTGATCCACAAAACCATCTTTTATTTGGCATCAATATAGAGCCATCATCTCTTCTAGTGCAGGATGGGATGTCAACCCTTAAGTCAGTGACCAGCAACAGTGACTCCACTGCTGTACCTTTCCAATCTTCTAATTACATGAATACCACAGGCACTGATACTACACTGACTCCTGGAATGACACACAATATTGGTGAATCAGGCTTCCTACAGACTCCAGAAACTGGGGTCCAAGGAAACCCATCATCCAAAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCATTGGATATCACTAAATTCAGCAGCTATCCTGAGCTGCGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCATTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTCGTAAATAGTGTTTGGTATATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTGAGCTCAGTTCCAATTCAGAGGCTTTCTAATGGCATCTGTGATGACTTTGTGAGCCGTCTGGATCCGAGGAACTTAAGCAGCGAGATAACAACTGTCGGGTCTCTAGACTACTG 2633 0.4592 MRLSSAGFSPPPQEGEKRVPDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDGHIPNYPSLAPQLICQLHNLTMHADVETDEVYAQMTLQPLNPQEQKEAYLPVELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNERNQFLLGIRRANRPQTVMPSSVLSSDSMHFGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHARVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGEKQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDEDLGMNSPLLWLRDTTDGGLSFNFQGIGVSPWMQPRLEPSMLNLQTDMYQAVAAAALQDMRTLDPSKQHPAALLQFQQSQNFPNRTASLMQAQMLQQSQPQQVFQSNQEHHQHPSQSQAQTQTHLQLQLQHQNSFNNQHQCHHQQQQQVVDRQQIPSAVSTMSQLVSAPQPQSPPVQAISSLCHQQSFSEPNGNPVTSAIASPLHSILGSFPQDETSQLLNLSKTSSWIPVQTSTNRPRRHLGQCQGTLSQNSIALPPFPGRECPIDQEGSTDPQNHLLFGINIEPSSLLVQDGMSTLKSVTSNSDSTAVPFQSSNYMNTTGTDTTLTPGMTHNIGESGFLQTPETGVQGNPSSKTFVKVYKSGSFGRSLDITKFSSYPELRGELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWYIKILSPQEVQQMGNNGLELLSSVPIQRLSNGICDDFVSRLDPRNLSSEITTVGSLDY 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01715 877 PANTHER AUXIN RESPONSE FACTOR 1 628 - -
Bva13g01715 877 MobiDBLite consensus disorder prediction 481 516 - -
Bva13g01715 877 ProSiteProfiles PB1 domain profile. 744 829 IPR000270 GO:0005515
Bva13g01715 877 Gene3D - 740 833 - -
Bva13g01715 877 SMART B3_2 127 229 IPR003340 GO:0003677
Bva13g01715 877 MobiDBLite consensus disorder prediction 1 20 - -
Bva13g01715 877 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva13g01715 877 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bva13g01715 877 Pfam AUX/IAA family 741 829 IPR033389 -
Bva13g01715 877 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bva13g01715 877 Gene3D - 291 363 - -
Bva13g01715 877 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bva13g01715 877 SUPERFAMILY CAD & PB1 domains 740 819 - -
Bva13g01715 877 PANTHER AUXIN RESPONSE FACTOR 631 857 - -
Bva13g01715 877 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bva13g01715 877 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 628 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g01715 877 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 631 857 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g01715 877 Gene3D - 125 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01715 Bva-Chr13 13342344 13349465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01715 1 483 B3 DNA Binding Superfamily AT1G30330 84.836 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva13g01715 AUX_IAA 1.4e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01715 13 13342344 13349465 Bva13g01715 13 13342344 13349465 ECH