Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01680 atggaACAGTTGAAATTAGATGCAGAATCTCACACCAAACAGGATTCTTCTTTTAAACACAAACCAAAAAGTGACATTACAATTGAGGATGCAGGCAGGCCGCCAAATCCAGAGGTATCATGCAAATGGGATCCAAGTGAACCACGCAGACCTAAGATTGAGGAAGCACCTGTGTTTTATCCAAATCCTGAGGAATTTGAGGACACTCTTGGTTATATAGCAAAGATACGCTCCGAAGCAGAACCCTATGGAATATGTAGGGTGATCCCTCCATCTTCTTGGAATCCTCCCTGCCCTCTTAAGGAGAAAAATGTGTGGGAAGTATCAAAATTTCCTACTCGTATTCAGCAAATTGACTTGCTTCAAAATAGGGAGCCcatgagaaagaaaacaaggagcAGAAAAcgtaaaaggagaaagaatgCAAGAATAGGAACTTGTAGGAGACATCTCAATTCAGTTCCAGAAGCTGAACCTGATGAGAAATTTGGATTTCAAACAGGATCAAACTTCACGCttgaaaaatttcaaaattatgcCAAATTTTTTAAGGAATGTTACTTTGGAATGAAGGATGGTAGAGAGGACATAAcaattagtaataataatcACCACAAGAGATGGGAACCCACGGTGGAGGACATTGAAGGAGAATACTGGAGAATAGTTGAGCAACCAACAGATGAAGTCGAGGTGTACTATGGTGCGGACTTGGAAGCTCAAGCACTTGGAAGTGGTTTCCCAAAGGTTGATCCCTTAAATGGGGGTGATTTAGATCAGTATGCCTTGTCCGGCTGGAACCTGAATAACTTTCCCCGGCTTCCAGGTTCTGTCCTTGCTTTTGAAGGAAGTGATATATCCGGAGTTCTAGTGCCCTGGCTATACGTTGGGATGtgtctttcatcattttgcTGGCATGTTGAGGATCATCACCTGTATTCACTTAATTATCTGCATTTTGGTGATCCAAAAGTATGGTATGGAGTGCCTGGAAAATTTGCTTCAGCTTTGGAAGATGTAATGAGAAAGCATTTACCTGATTTATTTGAGGAACAACCAAATTTACTAAATGAACTGGTGACTCAACTATCTCCTACAATTCTAAAATCTGAGGGAGTCCCTGTATATCGTACTGTCCAGAATCCTGGGGAATTTGTCATTACCTTTCCAAGGGCATACCATGCTGGATTCAATTGCGGTTTTAACTGTGCAGAGGCAGTGAATGTGGCACCCGTTGATTGGCTGGTGCATGGCCAGAATGCTGTTGACCTTTACAGTAAGCAGTGCCGCAAGACATCATTGTCACATGACAAATTACTATTTGGTTCAGCTCTGGAAACTGTGAGATCCCTTGGGGAAATAGTCCTTCTTGGAAAGGAAACtgccaaaaatttgaaatggaaAAGTGTTTGTGGGAAGGATGGAGTACTTACCAAAGCAGTTAAGACAAGGATAAAGATGGAAGAAGAGAGGTTAAACCGTCTTCCACAGCATATAAAGTTGCTGAAGATGGAAAGAAGCTTTGATAAGGAAACGGATAGAGAATGTTTCTCTTGCAGCTATGACTTGCATCTATCTGCAACAGGTTGTGAATGCTCTCATAATAGATATTCTTGCCTCAGACACTCAAAGTTGTTTTGTTCATGTGGAATGGACAAACGGTTTGTCCTGCTTCGTTATACTTTAGATGAGCTAAATTTGTTAGTTGAAGCATTAGAAGGAGAAGCAGAAGCTATTAAAGCTTGGATGAATATAATCTCAGCAATTGTTGCTGCTGATGCTGAGGACGCTCGCAAAAGAAAGCTAGATGTAAAGAGAGATGTGTGTGAAACCAATAGCACTAAATGTGAAAGTTCATCTTGTTGTGCAGGAAAAGAGGGGaagtcaaatttaaattgtagCAGTTCACATAGTCATGTTTCTTCTGAGTTAGTCCAGTCAGATTCTCAGCATGGAACTTTCAGTGCATCATACAACACCAAAGATAGtcataattatgatattaacCATAAAAATGTGGTTGTGAATGATGAAGTTAAGATGGAGAAGGCAGGTTTTATGGATTTAAACATTGATGTTGTATCCAGTGAATTTGAATCTTCTTTGCTGCACAATGCTGACAACCATCAAAATTTGGGTGTGCAAAAAGTCTATTATTCTGATGCCCCAAAGGAACAAGACAGCATGCAACTTGATGCTGATACAAATACAACATACTCAGTTTCTCTTTTGAATATTGATTATCCATCAAGTTCAAGGAATGTTCACAATCCTTGTTCATTAGATGGTGGAAAGTTGTTTGGGGTTAATCTGCAACGGCATATAGATACAGAAGTGTTACCTAACATTGTGTCTAATATGGAAGTCTTAGGGACATCGAATAGAAGTATAAGTACAATAGATCGAAACTACCTCTTAATGCAAGAGTTTGGCACTTCTGTCGAGCCTATAATTTTGGGCTCTGTTGTCCATGGAAAGCTCTGGTGCAGTAAGCATGCCATATATCCAAAAGGATACAAGAGCCGTGTTAAGTTCTTCAGCGTACTTGATCCATCAAAgatatgtaattatatttctgAAGTCCTTGATGCCGGATTTCTTGGGCCTCTTTTCAAGGTTAGCATGGAAGAACATCCTAGTGTCTCTTACACAAATGTCTCTGTAGAGAAGTGCTGGGAATTAGTTCTGGAGGGAGTAAATTGTGAAATTGAAAGGAGGGGGAATCTAGGGAAACCGCAACAAACTCCCTTGCTGCCTCCGAAAAGCATTCATGGTCTTAAAATGTTTGGCTTCCTCTCCCCATCTATTGTGGAGGCTATTGAAGCTCGGGATCCAAATCATCAATGCTTAGAGTACTGGAATCACAGGGAAAGAGTCTCTGTATATTCTGGAAGTGCCAGTGATGTCAACAAGAACAGAGACGGGTCTAGTACTGCTTCTTTAGGGTTGCTAAAACAGGCTAGCAGTGATGAGTTAAGCACAATGCCTAAGTTGCTTAGCTCCAATATGCTGAATGCTCGGTGGCGAGTGGTGTTTTCGGCACTGATTGCTCAGAACCAGAAAATTCCCAGATA 3074 0.3907 MEQLKLDAESHTKQDSSFKHKPKSDITIEDAGRPPNPEVSCKWDPSEPRRPKIEEAPVFYPNPEEFEDTLGYIAKIRSEAEPYGICRVIPPSSWNPPCPLKEKNVWEVSKFPTRIQQIDLLQNREPMRKKTRSRKRKRRKNARIGTCRRHLNSVPEAEPDEKFGFQTGSNFTLEKFQNYAKFFKECYFGMKDGREDITISNNNHHKRWEPTVEDIEGEYWRIVEQPTDEVEVYYGADLEAQALGSGFPKVDPLNGGDLDQYALSGWNLNNFPRLPGSVLAFEGSDISGVLVPWLYVGMCLSSFCWHVEDHHLYSLNYLHFGDPKVWYGVPGKFASALEDVMRKHLPDLFEEQPNLLNELVTQLSPTILKSEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAVDLYSKQCRKTSLSHDKLLFGSALETVRSLGEIVLLGKETAKNLKWKSVCGKDGVLTKAVKTRIKMEEERLNRLPQHIKLLKMERSFDKETDRECFSCSYDLHLSATGCECSHNRYSCLRHSKLFCSCGMDKRFVLLRYTLDELNLLVEALEGEAEAIKAWMNIISAIVAADAEDARKRKLDVKRDVCETNSTKCESSSCCAGKEGKSNLNCSSSHSHVSSELVQSDSQHGTFSASYNTKDSHNYDINHKNVVVNDEVKMEKAGFMDLNIDVVSSEFESSLLHNADNHQNLGVQKVYYSDAPKEQDSMQLDADTNTTYSVSLLNIDYPSSSRNVHNPCSLDGGKLFGVNLQRHIDTEVLPNIVSNMEVLGTSNRSISTIDRNYLLMQEFGTSVEPIILGSVVHGKLWCSKHAIYPKGYKSRVKFFSVLDPSKICNYISEVLDAGFLGPLFKVSMEEHPSVSYTNVSVEKCWELVLEGVNCEIERRGNLGKPQQTPLLPPKSIHGLKMFGFLSPSIVEAIEARDPNHQCLEYWNHRERVSVYSGSASDVNKNRDGSSTASLGLLKQASSDELSTMPKLLSSNMLNARWRVVFSALIAQNQKIPR 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01680 1024 SMART fyrn_3 820 864 IPR003888 GO:0005634
Bva13g01680 1024 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Bva13g01680 1024 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Bva13g01680 1024 Gene3D Cupin 41 410 - -
Bva13g01680 1024 SUPERFAMILY Clavaminate synthase-like 224 444 - -
Bva13g01680 1024 SMART cupin_9 260 426 IPR003347 -
Bva13g01680 1024 Gene3D - 813 950 - -
Bva13g01680 1024 MobiDBLite consensus disorder prediction 1 28 - -
Bva13g01680 1024 MobiDBLite consensus disorder prediction 1 50 - -
Bva13g01680 1024 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 974 - -
Bva13g01680 1024 ProSiteProfiles FYR domain FYRN motif profile. 806 864 IPR003888 GO:0005634
Bva13g01680 1024 Pfam jmjN domain 57 90 IPR003349 -
Bva13g01680 1024 ProSiteProfiles FYR domain FYRC motif profile. 866 957 IPR003889 GO:0005634
Bva13g01680 1024 Pfam C5HC2 zinc finger 516 566 IPR004198 -
Bva13g01680 1024 SMART JmjN_1 55 96 IPR003349 -
Bva13g01680 1024 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 974 - -
Bva13g01680 1024 Pfam F/Y-rich N-terminus 819 861 IPR003888 GO:0005634
Bva13g01680 1024 ProSiteProfiles JmjC domain profile. 260 426 IPR003347 -
Bva13g01680 1024 SMART fyrc_3 870 968 IPR003889 GO:0005634
Bva13g01680 1024 Pfam F/Y rich C-terminus 868 955 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01680 Bva-Chr13 12357217 12365775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01680 808 960 JUMONJI Transcription Factor Family AT1G30810 57.143 5.56e-50 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva13g01680 JmjC 1.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01680 - - gmx:100784581 1279.62