Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01644 ATGAGCAACAAAGGCCAAAATGAGGGAAAGTCACCTGAACCATTTGGTCCATTTGGGATGTCAGGATCTTCGAGTACCAACAATAGAAGTGCAAGTTTTCTTCAGGGTGAAATAGATTTGAATTTGGAATATAAGGGGGACAATTCATTCAATCCTAATGAGACAGAAACTAAGAATTCTAGCAATTCTTCAGATCCGGTTGTTGTAATTCAAAGTGGGATTTCTGAATATGTAGTGGAGGAAAATGGTGAGCACGACAGGTCAGGGGAAGTTATATGTTTATCCTGCAAGAGAAGATCTCCTGAGAATGATTTGAGAGAATTGTCAATAGGTGAAAGTTCAAAAATGGCTGAGGAAGCTAGAACTCACAAACGAAGGGCTGCCATTAACGAAGGAAGCACAAGTTACAGCTTAAACACCTCTGCTGTGCGCTACACTACAGGTCCAGAAATTAGACAACCTCAACAATTTGAGGCAAGAACTGGTCAAGGTACTAGAGGGCCAACTTCTGGAACTGTTGCATATCCTTCACTGTATGGTCCTGTTTCTGGCCGTCCTTTATCAAATGCTCCTGCATACGTCAATACTCCTTTATCAAATGCGCCTGCATACGTCCATACTCCTGAATATCACATTTCTAGTGCTAATATGTCAAATGCTCCTGGATGGTTTCGTAGTATTAATTTTGCTCAAGAATATGTACAGATAAGCCCTAATATTGTGAACCGCTCCGCGGGTGCATTTAGTATTGGTTCTCACAGGCACAGCAGTCACCGCCCATTATTACCTTTATATCCTTCAAGACTGTCCCCAGGAATGGTATCTTCAAATAGATTTGTCAATAGAACATTTCAGAACCAACAAATGTCAGTGGTTGATAATATTGAACCCCCTTTCACTTTATGGCCTCGTGCTGAGAGTATAGACAGCGTATTGAGCGAGGCTCGACATGCCTTGCAAATTCATTATAACAGCATCTCTGCGCTATTACAGCTGCAGGAGCTTCTCGCCCTTCAAGAACAAATTGGTGATGAGAGCACTGGATTGAGTGAGGAAGATATTATGATGCATCTTAAGCAGGAAAATTTCGTGTGCATTACTGAGAGGATTCCTACAAATGAGTCTTGCTGCATATGTCAGGAGGAATATGCTGATGGTCAAAATATTGGGAGGTTGAACTGTGATCACAAGTTTCACTTTTCATGTATTAAAGAGTGGCTCGGGCTGAAGAATACTTGCCCACTTTGCAAATGTACTGCTCTAGTTGTTCCACCAGTTGAAGACCATGATGGTTA 1295 0.417 MSNKGQNEGKSPEPFGPFGMSGSSSTNNRSASFLQGEIDLNLEYKGDNSFNPNETETKNSSNSSDPVVVIQSGISEYVVEENGEHDRSGEVICLSCKRRSPENDLRELSIGESSKMAEEARTHKRRAAINEGSTSYSLNTSAVRYTTGPEIRQPQQFEARTGQGTRGPTSGTVAYPSLYGPVSGRPLSNAPAYVNTPLSNAPAYVHTPEYHISSANMSNAPGWFRSINFAQEYVQISPNIVNRSAGAFSIGSHRHSSHRPLLPLYPSRLSPGMVSSNRFVNRTFQNQQMSVVDNIEPPFTLWPRAESIDSVLSEARHALQIHYNSISALLQLQELLALQEQIGDESTGLSEEDIMMHLKQENFVCITERIPTNESCCICQEEYADGQNIGRLNCDHKFHFSCIKEWLGLKNTCPLCKCTALVVPPVEDHDG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01644 431 CDD RING-H2_TTC3 375 417 - -
Bva13g01644 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 334 422 - -
Bva13g01644 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 45 164 - -
Bva13g01644 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 334 422 IPR045191 GO:0061630
Bva13g01644 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 45 164 IPR045191 GO:0061630
Bva13g01644 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 421 IPR013083 -
Bva13g01644 431 SMART ring_2 376 416 IPR001841 -
Bva13g01644 431 MobiDBLite consensus disorder prediction 18 35 - -
Bva13g01644 431 ProSiteProfiles Zinc finger RING-type profile. 376 417 IPR001841 -
Bva13g01644 431 SUPERFAMILY RING/U-box 365 423 - -
Bva13g01644 431 Pfam Ring finger domain 375 417 IPR001841 -
Bva13g01644 431 MobiDBLite consensus disorder prediction 46 66 - -
Bva13g01644 431 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01644 Bva-Chr13 11519584 11522216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01644 330 424 C3H Transcription Factor Family AT2G15530 50.505 7.28e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01644 - - aprc:113870256 122.479