Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01544 ATGGCCAAGGGAAAGTTAACTTTAGGTCGCCAAAAGATCCCCATAGTGAAAATACCAATGAAGAGCCATTTGCAAGTTACATTCTCTAAACGTCGCTCAGGGCTCTTCAAAAAAGCTAGTGAGATTTGCACCCTTTGTGGAGTTGAGATTGCAATCATAGTCTTTTCTCCAGCTGATAAGGCCTTCTCCTTTGGCCACCGCGATGTCGAGTCCATCATTGATCGCTTTCTGACCAGAAACCCAGCACCTGGCTATGGTGCACGCCACCTTGTGGAGGCACACCGAAATGCTAGTGTTGGCGATCTCAACATGCAGCTCACGCAGCTTCAGAATCAACTGGAAATGGAGAAGAAGCGCGGTGAAGAGATCGATCAAGCCAGGAAACTGAGACAAAGGCAATTCTGGTGGGAGAGTCCCATTGATGAACTTGGTTTGCAGCAGTTGCAGCTTTTGATGGTTTCAATGGAGGAGCTGAAGAAGAATGTTACAAAGCAGGCTAACAAAATCTTAATGGGGCATAACAGCATGGCTTCACCAATTGTTGGGGCAAATGGAGTCATGTACTATGATGCCTTTGAGAAAAAACCTGAGATCCAGGCAATTTCTCCCAATGCTTTTAATATCCATTTCAATCATGGGCACCTTTG 647 0.4575 MAKGKLTLGRQKIPIVKIPMKSHLQVTFSKRRSGLFKKASEICTLCGVEIAIIVFSPADKAFSFGHRDVESIIDRFLTRNPAPGYGARHLVEAHRNASVGDLNMQLTQLQNQLEMEKKRGEEIDQARKLRQRQFWWESPIDELGLQQLQLLMVSMEELKKNVTKQANKILMGHNSMASPIVGANGVMYYDAFEKKPEIQAISPNAFNIHFNHGHL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01544 215 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 175 - -
Bva13g01544 215 Coils Coil 99 126 - -
Bva13g01544 215 PANTHER MADS BOX PROTEIN 7 175 - -
Bva13g01544 215 Gene3D - 87 177 - -
Bva13g01544 215 Gene3D - 21 84 IPR036879 GO:0003677|GO:0046983
Bva13g01544 215 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 SUPERFAMILY SRF-like 8 81 IPR036879 GO:0003677|GO:0046983
Bva13g01544 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Bva13g01544 215 Coils Coil 145 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01544 Bva-Chr13 9060972 9061619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01544 5 173 Type I MADS-box Gene Family AT5G60440 52.326 3.88e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva13g01544 SRF-TF 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01544 - - gmx:100793705 255.758