Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01543 ATGGTGAAGGGAAAGTCTACCTCAGGTCGCCAAAAGATCCCAATTGAGAAAATACCAAAGAAGAGCCATCTGCAAGTTACATTCTCTAAGCGCCGGTTAGGGCTTTTCAAAAAAGCTAGCGAACTTTGTACTCTTTGTGGAGTTGAGATTGGAATCATAGTCTTTTCTCCTGCTGAGAAAGCATTTTCATTTGGCCACCCCAATGTTGAATCCATCATTGATCGCTTTCTCACTCGAAACCCGGCACCGGATTCTGGTGCTCACCAGCTTGTTGAGGCTCACCGAAATGCTAATGTTCGCGATCTCAGCATGCAGCTCACGCAGCTTCAGAATCAATTTGAAGTCGAGAAGAAGCGAGGTGATGATCTTGATCAATCAAGGAAACTTAGACAAAGACAATTCTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTGCAGGAGTTGCAGCTATTGAAGCTTTCAATGGAGGAGCTGAAGAAGAATGTAGAAAAACAAACTAACAAGATCTTAATGGAGCATAACAGCATGTCTTCACcaattgttggaccaaatggaGTCAGATACTATGATGTCTTTGAGAAAAAACCTGAGATCAAGATGTTCTCAACTGCTCCTAATGCTTATAATCTCCATTTCAATCATGGgtatctttg 653 0.4104 MVKGKSTSGRQKIPIEKIPKKSHLQVTFSKRRLGLFKKASELCTLCGVEIGIIVFSPAEKAFSFGHPNVESIIDRFLTRNPAPDSGAHQLVEAHRNANVRDLSMQLTQLQNQFEVEKKRGDDLDQSRKLRQRQFWWESPIDELGLQELQLLKLSMEELKKNVEKQTNKILMEHNSMSSPIVGPNGVRYYDVFEKKPEIKMFSTAPNAYNLHFNHGYL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01543 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Bva13g01543 217 Gene3D - 87 178 - -
Bva13g01543 217 PANTHER MADS BOX PROTEIN 7 177 - -
Bva13g01543 217 Coils Coil 145 168 - -
Bva13g01543 217 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Bva13g01543 217 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Bva13g01543 217 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva13g01543 217 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Bva13g01543 217 Coils Coil 99 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01543 Bva-Chr13 9057584 9058237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01543 5 170 Type I MADS-box Gene Family AT5G60440 52.071 8.36e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva13g01543 SRF-TF 3.6e-22 No_clan