Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01483 ATGTTTGACAGAGAGATGAAGAAATTCCCAATTGATGCAGCGGATGCTAGCAAAGGATCCAACGACCAGAGGCAAAGAGTTACAAGAGAAAACTCTGAAAACGAACAGGAAAACATTGAAGACCAAAGTGAAATGAAGcataaagaagaaagggaaTCAGACCAGGGAGGTTACTCTATCGATATTCCTTCCTTTATCGATGGTAGGAATCAATCTATTTCAGTATACTTTAACGATGGCGTGCTTGATTGCTTCATTTGTTATGAAGCTTTGAGTATTCCTGTCTTCCAGTGTAGAAATGGGCATATTATTTGCTCTTCCTGCTGTGTCAAGGTTAAGAACAAATGCCCGATGTGTTCAAAGCTCATTTGCAACCGTTGCAAAGCAATTGAGAATGTGCTAAAATCTGTACAAATATCTTGTGCAAATGCACCATTTGGTTGCGAGAAGACAACGTCTTACAGCAAGAAAAAGGGTCACGAGAAGAAATGCAGCTATGCACCATGCTTTTGCCCGCGTGCAGGTTGCAACTTTGTTGCGTCCTCCAAGGAATTAGCCCTACACTTCAGAAGTGAACATGGTTGGTCCCCAATCTCTTTTGAGTTTGGTGCCTATTTCTCTGTCTCTTTAAACATAAGTGATGAAATCACTATTCTTCAAGAGAAGAATGATGGCAATCTTTTTGTTCTCAGCAATGATGTTAAGGATGATAGGTATGTGATTGGTGTCACCTGCATCACCGCTCACACATCCGAGGCACCATTCCATAATAGAATTTTGACACCAAGAACTGAAGGACTGTGTCGTCGGAAGTTACAGTCATTTATCCCTAACAGTCAAGGTCCCGTAGCCATTACTCCTGCACTAGGGTTGTCCTTACTATCTCGTTATTTCTCTTCTGATGGAGAGCTGAAGTTGCATATTCGCATAGGGAGGGATTTTTA 944 0.4089 MFDREMKKFPIDAADASKGSNDQRQRVTRENSENEQENIEDQSEMKHKEERESDQGGYSIDIPSFIDGRNQSISVYFNDGVLDCFICYEALSIPVFQCRNGHIICSSCCVKVKNKCPMCSKLICNRCKAIENVLKSVQISCANAPFGCEKTTSYSKKKGHEKKCSYAPCFCPRAGCNFVASSKELALHFRSEHGWSPISFEFGAYFSVSLNISDEITILQEKNDGNLFVLSNDVKDDRYVIGVTCITAHTSEAPFHNRILTPRTEGLCRRKLQSFIPNSQGPVAITPALGLSLLSRYFSSDGELKLHIRIGRDF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01483 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 189 IPR013083 -
Bva13g01483 314 SUPERFAMILY RING/U-box 83 125 - -
Bva13g01483 314 CDD RING-HC_SIAHs 82 120 - -
Bva13g01483 314 MobiDBLite consensus disorder prediction 22 56 - -
Bva13g01483 314 Pfam Seven in absentia protein family 126 193 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bva13g01483 314 MobiDBLite consensus disorder prediction 1 59 - -
Bva13g01483 314 ProSiteProfiles Zinc finger SIAH-type profile. 136 194 IPR013010 GO:0008270
Bva13g01483 314 Coils Coil 29 52 - -
Bva13g01483 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 311 - -
Bva13g01483 314 SUPERFAMILY TRAF domain-like 136 276 - -
Bva13g01483 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 311 IPR044286 -
Bva13g01483 314 ProSiteProfiles Zinc finger RING-type profile. 84 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01483 Bva-Chr13 7935505 7936877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01483 81 193 C3H Transcription Factor Family AT2G41980 35.345 8.80e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01483 K04506 - qsu:112007121 223.787