Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01454 ATGACCTTAAGCAAAAGAAGTAGAGCTCTTGAGAAAGCTAATGCTTTCAGATCTCAATTTCCATCCTTCATTGTTGTCATGAAACCATCATACGTCGATTCTTACGGTCCACTGAACATACCAGTTGATTTTGTTAGTAAGTACCTTGACTTGGAAAAGAAGAGGGGGATTGTCACTCTTCAGGTGTTAGATGGAAGAGAATGGTCTATTACTTTCGTCATAAGAATCAATGGCAGAAGACCAAAGTTTGAACTCTCTAACGGGTGGAAGGCATTTGCAAGGGCCAATAACTTGAATTTAGGTGATGTTTGCGTCTTTGAGCTCATAAACAAGACTGAAATTGCCTTTAGGGTTTCGATCTTCCGAGACTCTGATAGTCTAAACCATCGTTTCTCACAAGGGAATTttaaacttctctacatgacCAGTTCATGGCTGAGAAATTTCACTGCTACTCAGAGAAGCTTAGATTTGAACCCAAGTGTACCAGCGAGTTTTGTGAAAGGGTTTATCAAGCCTGGTCAAGAAATCATTGCTACTATGCAAGTTCGAGAAAAATCATGGAAGATTAAGTTGATCCGTCCTTCCAAGATGTCTGCAAGTTATTTTTCTGCAGGTTGGTCAGCATTTGTGGGAGAAAATGATCTAGAAGTTGGTGATGTTTGCCTCTTCAATTGGCTTAGCACTGATGTGATTAAAGTTTCCATTCTCAAGAACTA 719 0.388 MTLSKRSRALEKANAFRSQFPSFIVVMKPSYVDSYGPLNIPVDFVSKYLDLEKKRGIVTLQVLDGREWSITFVIRINGRRPKFELSNGWKAFARANNLNLGDVCVFELINKTEIAFRVSIFRDSDSLNHRFSQGNFKLLYMTSSWLRNFTATQRSLDLNPVSILTHVFETIIVDFI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01454 176 Gene3D - 1 126 IPR015300 -
Bva13g01454 176 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 4 126 - -
Bva13g01454 176 ProSiteProfiles B3 DNA-binding domain profile. 23 124 IPR003340 GO:0003677
Bva13g01454 176 SMART B3_2 23 124 IPR003340 GO:0003677
Bva13g01454 176 Pfam B3 DNA binding domain 23 123 IPR003340 GO:0003677
Bva13g01454 176 CDD B3_DNA 21 122 IPR003340 GO:0003677
Bva13g01454 176 PANTHER B3 DOMAIN-CONTAINING 4 126 - -
Bva13g01454 176 SUPERFAMILY DNA-binding pseudobarrel domain 18 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01454 Bva-Chr13 7697205 7698941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01454 6 122 B3 DNA Binding Superfamily AT5G42700 38.843 1.74e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva13g01454 B3 9.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01454 - - lja:Lj1g3v3690290.1 118.242