Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01404 ATGGAGTGCATTGGGAAGTTGGAGGAAGATATGGGGGAATGCAAGCAAATTGAAGAAAAAGTGAAGCTTGATATGAAGCTTTCAACATCAGGGTTGGGTCAACAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCGGAGCTATGGCATGCATGCGCGGGGCCTTTGGTGTCCCTACCAAATGCGGGGACTCGTGTGGTATACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCGAGCTTGCCACCCCAGTTGATATGCCAACTTCATAACGTCACTATGCATGCAGATGTTGAAACTGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGTATTCCAAGTAAGCAGCcctcaaattatttttgcaaGACATTAACAGCAAGTGACACCAGCACACACGGAGGGTTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTCTCCCAGCAACCGCCAGCTCAGGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGgGACAGCCAAAGCGGCACCTTCTTACAACAGGATGGAGTGTATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCCCAAACTGTGATGCCATCATCAGTTCTATCAAGTGATAGTATGCATATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCTGCTACTAATAGCTGTTTTACAGTCTTCTATAATCCAAGGGCTAGTCCATCGGAGTTTGTGATACCTCTTTCTAAATATATCAAAGCAGTATACCATACACGAATTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGCGATCTGGATCCTGTTCGCTGGCCGAACTCTCATTGGCGATCTCTGAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCAAGGGTGTCTTTATGGGAAATTGAACCTTTAACGACTTTCCCCATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCCCTTCATCTTTTCATGATGGCAGAGATGATGCAACTAATGGGCTAATGTGGCTGAGAGGTGGAGACCCTGGCCTTACTTCCATGAATTTTCAAGGTGTTGGTTTGTTGCCTTGGATGCAGCAGAGACTGGATCCAACCTTGATTGGAAATGATCATAATCAGCAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGGGCCTTGGGAGTGGAGATCTCTTGAGGCAGCAAATGATGCATTTTCAACAGCCTTTTAATTACCTTCAACAAGCTGGAAACCATACTTCTCTGCAACTTCAGCAGCAGCAGGCAATTCAGCAGTCAGTCCCTTCTAATATACTGCAGCCACAACAAGGGCAAGTATTGACGGAGAATCTGGCGCAGCATCTCCTTCAAAAGCCACATAACAATCAAGAAGACCAAGCGcggcagcagcagcagcaaagTACTTACCATGACACACTTTTGATTCAAAATGATCAGCTCCATCAAAGGCAACAACACTCTAATTTGCCGTCACCATCGTATTCTAAGCCAGATTTCTTAGATTCTACCATCAAGTTCACTTCATCAGTTTCCCCTGGACAAAATATGCTTGGTTCACTTTGTCCTGAAGGGAGTGGTAACCTTTTGAATCTATCCAGAACCAATCAGTCTGTGCTGACTGAACAGTTGCCCCAACAATCATGGACTCCAAAGTATGCACCTGTGCAAGTCAATACCTTTGGCAACCCAGTGTCACACACACAATATACTGGAAAAGATTCTGCAATGGTGCCACCACATTGTAATTCAGATACCCAAAATTCTACACTTTTTGGTGTTAACATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTGGTTTTACCAGTTCATCAACTGGTACTGAAGCCACAACAATGCCATTGGGGGATTCTGGATTTCAGAGTCCTCTATATATGCAAGACTCATCAGAATTGTTGCAGAGTGTGGGGCAAGTTGACCCACAAAACCAAAACCGGACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCGCTCGACATCTCCCGGTTCAGCAGCTATCATGAACTGAGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCCTTTGTCAACAATGTCTGGTATATCAAGATACTTTCACCAGAAGATATTCAGAAAATGGGAGAGCAAGAATCTCAGAACCTTGTTTCTGGGCTACCGTCTGTTGGCTCACTTGAATACTG 2546 0.4482 MECIGKLEEDMGECKQIEEKVKLDMKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSLKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSFHDGRDDATNGLMWLRGGDPGLTSMNFQGVGLLPWMQQRLDPTLIGNDHNQQYQAMLAAGLQGLGSGDLLRQQMMHFQQPFNYLQQAGNHTSLQLQQQQAIQQSVPSNILQPQQGQVLTENLAQHLLQKPHNNQEDQARQQQQQSTYHDTLLIQNDQLHQRQQHSNLPSPSYSKPDFLDSTIKFTSSVSPGQNMLGSLCPEGSGNLLNLSRTNQSVLTEQLPQQSWTPKYAPVQVNTFGNPVSHTQYTGKDSAMVPPHCNSDTQNSTLFGVNIDSSGLLLPTTVPGFTSSSTGTEATTMPLGDSGFQSPLYMQDSSELLQSVGQVDPQNQNRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQESQNLVSGLPSVGSLEY 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01404 848 SUPERFAMILY DNA-binding pseudobarrel domain 136 281 IPR015300 -
Bva13g01404 848 Pfam AUX/IAA family 736 824 IPR033389 -
Bva13g01404 848 Gene3D - 316 388 - -
Bva13g01404 848 PANTHER AUXIN RESPONSE FACTOR 25 837 - -
Bva13g01404 848 SUPERFAMILY CAD & PB1 domains 737 814 - -
Bva13g01404 848 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva13g01404 848 ProSiteProfiles B3 DNA-binding domain profile. 152 254 IPR003340 GO:0003677
Bva13g01404 848 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 837 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva13g01404 848 SMART B3_2 152 254 IPR003340 GO:0003677
Bva13g01404 848 CDD B3_DNA 151 252 IPR003340 GO:0003677
Bva13g01404 848 ProSiteProfiles PB1 domain profile. 740 824 IPR000270 GO:0005515
Bva13g01404 848 Pfam B3 DNA binding domain 152 253 IPR003340 GO:0003677
Bva13g01404 848 MobiDBLite consensus disorder prediction 567 586 - -
Bva13g01404 848 Gene3D - 736 829 - -
Bva13g01404 848 Gene3D - 150 253 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01404 Bva-Chr13 7384017 7391488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01404 122 831 B3 DNA Binding Superfamily AT5G37020 69.764 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva13g01404 AUX_IAA 1.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01404 - - gmx:100780393 1461.05