Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01401 ATGCTGCAACATAAGCTGGTGAGCATTTTGGTCATTTGTTGGAGCTGTCTCTCTGCAGTTGCAGACCCAGGGACTCTTCTGCTAAACACAGGTTGCAGTCCGTACAACGCCTCCAACGTGCACGACTTCAATGGCGTTGTAAACAGAACGTTTTCGGCCCTTAGAAGCCAAGTGAGCAATGAAAGAAAGCATTTCGCCACGGCGCAGAGCTCCAGCGGGGACCCCTTTTATGCTATGTTTCAATGCAGAAACTATCTCTCCAACGCTGACTGTTTGACTTGCTTCAACACAGCCGCCGCCCAGATCCGAAACTGCTCCTCCGGCAACGGTGCCCGTGTCATCTATGATGGCTGCTTCCTTAGGTATGAGAGTGCTGCCTTCTTTGAGCAGAGTCCAACTGGACTTGGCAATAACATGTTTTGTGAGAATCAAACGGCAACTGAAGGCACAGCATTTACTGCAAATGCAGAAGAAGTGTTGAAGGATCTTCAAGTGGCTACACCCAAAATCAAAGGCTTCTATGCTGCTACAAAGGCAAAATTGACTGGTGCTGTTGGCAATGCATCGATCTATGCCATTGCACAGTGTTCAGAAACTGTCTCAGAGAGTCTTTGCCTGCAGTGCTTGCAAGTTGGATACAACAACATACACCATTGTCTTCCCAGGAGAGGTGGAAGGGCTTTTGATGCTGGTTGTTTCATGAGATACTCAGTGACACGATTTTTTGCTGATAACCAAACTATTGATATCACACCATTTCTTAAACAAGATGATTCAAGCAAGAAGTGGGCCATTATTGGTGGAGTTGCAGGAGGTGTGGCTCTTGTTCTCATCCTCCTTGCATTGTTTGTTTGGAGACGATCAAAATATCCCAGAAGGATTCCTAGAGGTGATATATTAGGGGCAACAGAGTTGAAAGGTCCAGTTAACTATAGGTATAGAGATTTGAAGGCTGCAACAAGCAATTTCagtgaagaaaataaacttgGAGAAGGGGGTTTTGGTGATGTATACAAGGGAACTTTGAAGAATGGGAAAGTAGTTGCTGTGAAGAGACTAGTTCTGGGAAAATCCAATCAGttagatgaaaattttgaaagtgaaGTCAAGCTTATAAGCAATGTTCATCATCGAAACCTTGTTCGCCTACTTGGATGTTGCAGCAAAGACGAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAGCAGCCTTGACAGATTCTTATTTGGTGAAAGAAGAGGTTCTCTCAACTGGAAACAACGGtgtgatattattttagGAACATTGGGATACATGGCACCTGAGTATGCAATCCACGGCCAGTTATCAGAGAAAGCTGATACTTATAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTAGTGAAGTAAAGGCTGATGATGCTGATGGAGAGTTCCTTCTCCAAAGGGCATGGAGACTATATGAGAGAGGCATGCACATAGAACTGGTGGACAATACCTTAGACCCCAATGAGTATGATGCAGAAAATGTGAAGAAAGTCATAGAGATTGCCTTGTTGTGCACGCAAGCATCAGCTATAGCAAGGCCAACAATGTCTGAAGTTGTTGTTCTGCTCAAAAGCAAGGGCATGCTGGAGCATCAGCAACCTACTATGCCGATTTTCGTTGATTCGAATTTGAAGTCCCGCCGAGATAATTCCACCTCAACTACTTCCTCTACATCGAGAGATAATGCCTCGAATCGGAATGCCTCCAATGCTACTGCCtccatttcttcaatttcagcTCGGTG 1787 0.4309 MLQHKLVSILVICWSCLSAVADPGTLLLNTGCSPYNASNVHDFNGVVNRTFSALRSQVSNERKHFATAQSSSGDPFYAMFQCRNYLSNADCLTCFNTAAAQIRNCSSGNGARVIYDGCFLRYESAAFFEQSPTGLGNNMFCENQTATEGTAFTANAEEVLKDLQVATPKIKGFYAATKAKLTGAVGNASIYAIAQCSETVSESLCLQCLQVGYNNIHHCLPRRGGRAFDAGCFMRYSVTRFFADNQTIDITPFLKQDDSSKKWAIIGGVAGGVALVLILLALFVWRRSKYPRRIPRGDILGATELKGPVNYRYRDLKAATSNFSEENKLGEGGFGDVYKGTLKNGKVVAVKRLVLGKSNQLDENFESEVKLISNVHHRNLVRLLGCCSKDEERILVYEYMANSSLDRFLFGERRGSLNWKQRCDIILGTLGYMAPEYAIHGQLSEKADTYSYGIVVLEIVSGQKSSEVKADDADGEFLLQRAWRLYERGMHIELVDNTLDPNEYDAENVKKVIEIALLCTQASAIARPTMSEVVVLLKSKGMLEHQQPTMPIFVDSNLKSRRDNSTSTTSSTSRDNASNRNASNATASISSISAR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01401 595 Pfam Salt stress response/antifungal 141 237 IPR002902 -
Bva13g01401 595 Pfam Salt stress response/antifungal 36 124 IPR002902 -
Bva13g01401 595 Gene3D - 25 127 IPR038408 -
Bva13g01401 595 Gene3D - 137 241 IPR038408 -
Bva13g01401 595 ProSiteProfiles Protein kinase domain profile. 323 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva13g01401 595 ProSiteProfiles Gnk2-homologous domain profile. 134 241 IPR002902 -
Bva13g01401 595 Pfam Protein tyrosine and serine/threonine kinase 431 535 IPR001245 GO:0004672|GO:0006468
Bva13g01401 595 Pfam Protein tyrosine and serine/threonine kinase 326 426 IPR001245 GO:0004672|GO:0006468
Bva13g01401 595 SUPERFAMILY Protein kinase-like (PK-like) 311 571 IPR011009 -
Bva13g01401 595 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 18 429 - -
Bva13g01401 595 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 429 577 - -
Bva13g01401 595 ProSiteProfiles Gnk2-homologous domain profile. 25 127 IPR002902 -
Bva13g01401 595 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Bva13g01401 595 Gene3D Single helix bin 255 289 - -
Bva13g01401 595 MobiDBLite consensus disorder prediction 551 595 - -
Bva13g01401 595 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 429 - -
Bva13g01401 595 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 429 577 - -
Bva13g01401 595 Gene3D Transferase(Phosphotransferase) domain 1 424 556 - -
Bva13g01401 595 Gene3D Phosphorylase Kinase; domain 1 300 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01401 Bva-Chr13 7353913 7359787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01401 32 595 Receptor kinase-like Gene Family AT1G70520 31.073 6.27e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Bva13g01401 PK_Tyr_Ser-Thr 5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01401 - - gmx:100813585 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01401 13 7353913 7359787 Bva13g01401 13 7353913 7359787 ECH