Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01382 ATggaggaagaaggagaagaagaacgAGCCATGGAAAGTTTCTTAAAATGGGCAGCAGAACTTGGAATATCAGATTCTCCTAGCACCAATCGACCTCAACTCTTTCGTTCCTCTTTGGGTTATTCTCTTTGTGTCTCTCATTTCCCTCAGTCGGGCGGTAGAGGTTTGGGTGCTCTGAGAGACCTCAGAAGGGGAGAGCTTATTCTCAAAGTTCCAAAATCTGCCTTAATGACAAGTGAAAGTGTTATGGAAGATAATCATCTCGCTATTGCTGTTAATAGACACCCTTCTCTCTCCTTTGCTCAGATATTGGTTGTTTGCTTATTGTATGAAATGGGTAAAGGAAAGACTTCAAAGTGGCATCCTTACTTGAAGCACTTGCCGCAGGCTTATGACATACTAGCCACTTTCGGTGAATTCGAGAAAGAAGCTCTGCAATTGGATGAGGCTCGGTGGGTCACTGAAGCGGCTGTCTTAAAAGCCAAATCAGAGTGGAAAGGAGCTAATGGTTTGATGCAAGAACTCAATCTAAAGCCCAAGCTTTTAACATTTAAGGCATGGCTTTGGGCTGCTGCAACGATTTCTTCCCGGACATTGCATATACCATGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGGAAGGAGCCATCTCATCTTGAAGAAGTTCAGTGTTTGCAGCCTAACACTTTCTTCCAAGCCACTATCTTGTCTAATGGAGACAATACTACCATTGCAGATGCAGAGCAGCTTGATTCTCATTTCGAGAGATTAACCGATGGTGGGTTTGAGGAAGATGTGGATGCATATTGCTTCTATGCTAgggaaaattacaagaaaggAGAACAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTTTTACCAGAAAATCCGAATGATAAAATCTTCATTCCCCTAGAACCAGATATATATTCTTCTAGTTCATGGTCTAAGGAGTCACTGTATATCCATCATAACGGAGAGCCTTCCTTTTCGCTGGTATCTGCTCTACGACTGTGGGCAACTCCTCAAAATAATCGGAGGTCTGTCGGTCATCTTGCATATTCTGGCTCTCAACTGTCATCGGACAATGAAATTTTCGTCATGAAATGGCTGTCAAAGACTTGCCGAGCTGTCTTGGAGAATTTGCCTACTTCAATTGATGAGGACATGTTGCTTCTGAATGCAATGGATAGTAGTCAAGATTTGTGCACTTTCCTGGGGAAGACAAAGCTTTTGTCTTGCAGGGAAGAGATTTGTGCCTTTTTAGAAGCTAATGATCTGCAGAATGAGGATAGTTTTATTGATGTTCTTCTATCTAGGAAAGCTAGAAGGTCCATGGACAAGTGGAAATTGGCTGTTCAATGGAGGGTCAAGTATAAGAAAGTTCTTACTGATTGTATAAGTTATTGCAATGAAATAATTCGTTCTCTATTGAGAATGGATGAAACTTA 1508 0.4052 MEEEGEEERAMESFLKWAAELGISDSPSTNRPQLFRSSLGYSLCVSHFPQSGGRGLGALRDLRRGELILKVPKSALMTSESVMEDNHLAIAVNRHPSLSFAQILVVCLLYEMGKGKTSKWHPYLKHLPQAYDILATFGEFEKEALQLDEARWVTEAAVLKAKSEWKGANGLMQELNLKPKLLTFKAWLWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGKEPSHLEEVQCLQPNTFFQATILSNGDNTTIADAEQLDSHFERLTDGGFEEDVDAYCFYARENYKKGEQVLLCYGTYTNLELLEHYGFLLPENPNDKIFIPLEPDIYSSSSWSKESLYIHHNGEPSFSLVSALRLWATPQNNRRSVGHLAYSGSQLSSDNEIFVMKWLSKTCRAVLENLPTSIDEDMLLLNAMDSSQDLCTFLGKTKLLSCREEICAFLEANDLQNEDSFIDVLLSRKARRSMDKWKLAVQWRVKYKKVLTDCISYCNEIIRSLLRMDET 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01382 502 PANTHER PROTEIN SET DOMAIN GROUP 40 7 483 - -
Bva13g01382 502 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 307 488 IPR036464 -
Bva13g01382 502 SUPERFAMILY SET domain 9 315 IPR046341 -
Bva13g01382 502 Pfam Rubisco LSMT substrate-binding 347 482 IPR015353 -
Bva13g01382 502 Gene3D - 326 500 IPR036464 -
Bva13g01382 502 ProSiteProfiles SET domain profile. 41 297 IPR001214 GO:0005515
Bva13g01382 502 CDD SET_LSMT 42 311 - -
Bva13g01382 502 Pfam SET domain 53 297 IPR001214 GO:0005515
Bva13g01382 502 Gene3D set domain protein methyltransferase, domain 1 7 311 - -
Bva13g01382 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01382 Bva-Chr13 7246993 7249772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01382 50 325 NAC Transcription Factor Family AT3G56570 21.698 1.79e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva13g01382 SET 8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01382 - - gmx:100787452 740.725