Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01379 ATGACAATGGAAGAAGAATCCATATCAGCAATCCCATTTGACAGAGCAGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTGCTCAAGTGTGGACGTAGAGGAAAGCCAAAACTCTGCCCTTTCAGACTTTCTCCGGATgagaaaaacttgatttggtaTTCTGGGCAGCAGGAAAAGCATCTCCGACTTACTGCAGTGACAAAAATTATTCAAGGACACGGAAATATTAGGCCCCAGAGGCAAAATCAACCTGAAAAGGAGTGCCATTCATTTTCTCTAATCTATTCCAATGGTGAACGCTCGCTTGATCTGATATGCAAAGACAAAGCACAGGCTGCTTCTTGGTTCGTGGGCTTGAGAGCTGTGATATTTAGGTCCCAGCATCCTAGGCCTCTCAGTAGTTTAAGAAGCTGCAAAGGTGTGCAGAGTTGTGTCAGCAGTCCAGCAGGAAtcttaagaagaaagaaaaatctaggCCTTCTGGAGGATACTGCTGATTTTACTCagGTTCACAGCTTGTGTGCAAGTCCTACTCTATCACTTTCAGAAAGGTGCTTTTCTGATGGCTTATCACAGGCTTCTGATAGCTTTTACTCAATGGAGTCATTCCTATCCAGTACTCAAAGTGTAACAGATATTTTTCTCCCAAATTCTCCATATATTGATCCAAAGTCTTGTAAAAAGGGTGCATCAGCATGTGTTGACACAGAATATGAGAAGAATTCACCCTATCAAAGTCTGATGCGTCGTCCCACTTGCTCATCTGTAGGAAATAATCATGTTTTGAAGGATGTCATGATCTGGGGTGGATGGACTGGAGGAACAGTAGGGAATGGGAATGATAGGTTTGTCAACCATCATGAAATCCATGCTGTATTGCCAAAGCTACTGGATTCCACTGTGATGCTAGATGTGCAAAACATTGCTTTAGGAGGAAAACATGCTGCCTTGGTTACAAAACAAGGGGAAGTTTTCTGCTGGGGTCAAGGGAAGGGTGGAAGGCTGGGGCATAAAATTGATCTTGATGTAAATTCACCCAAAATTGTTGAGTCTCTTAATGGGATCCACATAAAAGGTGTTGCCTGTGGTGAGAATCATACTTGTGCTTTGACAGATTCTGGTGAAGTATACACCTGGGGTGATGATGGTTGTGGTGCAGGCTTGGTTGCTGAAAGAACACAGAGAAGTCGGTGGATACCACATAAACTTTCTGGTTTAGATGGCATTAGTATTCTAAATATTGCCTGTGGGGAATGGCATACAGCCATTGTTTCTTCCTGTGGGCGGCTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGGCATGGGAATCTTCATAGCATTTCTCAACCGAAGGAAGTTGAATCTCTTCGAGGGCTACGGGTAAGATCTGTTGCTTGTGGGTCGTGGCACACAGCTGCCATTGTTGATGTCATGGTTGACCGTTTCAAGTATAATACATCTACTGGGAAGCTGTTTACTTGGGGTGATGGAGATGAAGGGCGGCTCGGCCATGCTGATAATGGAAGGAAGCTCTTACCAACATGTGTTTCTCAACTTGTGGATTATGATTTCATCCAGGTATCTTGTGGAAGAACCTTAACCATAGCACTTACTAATCTAGGTAAAGTTTTCACAATGGGAAGTGCTGTGCATGGCCAGCTAGGAAATCCACATGCCAAAGACAAAGCAGTAACAACTGTTGAAGGACTACTTAAGCAAGAGTTTGTCAAAGGAATATCATCAGGTTCATATCATGTTGCTCTCTTGACATCTTCTGGAAGTGTCTATACATGGGGCAAGGGTGCAAATGGGCAGCTTGGTTTAGGTGACACTGAGGACAGGTGCAGCCCTTCTTTTGTGGAGGCTCTAAGGGACCGACACATAGAAAGTATCACTTGTGGATCAAACTTTACTACTGCAATCTGTTTACACAAACCCATTTCCATCAGTGACCAATCAGCTTGTAATGGTTGTAAGTTACCTTTTAGTTTTACAAGGAAGAAGCACAACTGTTATAACTGTGGTCTTCTCTTCTGCCATGGATGCAGTAGCAGAAAAGTTACAAATGCATCTCTCGCGCCAAATAAGAGCAGGGCCTTTCGGGTTTGTGATCAGTGCTTCGATAAACAGCAAGCAAGAATGCATTCAGTTAATGCATCAAAGTCAAGTAATTACAATGCCCAGCAGCTGCTGAAGCATCAGAAGATGTTTCCTGATCTGAGAGAAGATAGAGGAGAAACAACTGTGACACAAGGTCCACTATTGTCTATCAGTCAATCATGTTACAGAAAAAGCATGCCTAGTGGAAGGAAGGAGTGGAGAAACCAACAAGAAAGCCAGCATCATTTGGAAGATACTTATTCTGTTTTGGGTGGAGTTCCACAATGGGGACAAGTTCCTTGTCCTGCTTCGTTTAGAATTAATTGCACAGAAAATTCTGTTGGGCATATTTCActatccaaaaataaatcagcTTCTGCTACTTATCATAATCTAGATTCTGTAGTATCCAACACTGCAAATTCGGAGAAAAACTTAGTAAAATCAGATAAAATGCTCATGGAAGAAGTACAGAGATTGAGAGCTCGGAGTAAGAGACTTGAAGAGCAATGTCAGCTCAGAGATCACGAGTTACAAGaatgtcataaaaaaatagaggagAGTTGGTGCTTGGCAAGGGATGAGGCTGCAAAGTGTAAAGCAGCAAAGGATGTCATAACAGCTTTGGCATTAAGGATTCATACAATATCAGAAAAAACCAGTGCTGGACAAGAAGCAAAGGTTGTAACAGATGAATGTCTGCCAGATTTATTACCCATACACGCAGATATCCATATTCCAAAAGATGGCAAAGTGAGTAGTCTAGCTGGTTCCCCCATAGTCTTCTCTGGCAGATTAAAATCCAAACTTGGGAGAAGCATGTTCCTCAAAAGTGATACATCAGTGGAGGATCCCCACTGCACCAGAGCAGAATCTCAACAAGACAGCATCGATGGCTCCGCAGATGAATGGGTAGAAGAGTTTGAAAGTGGCGTATACATCACACTGACAAAGTTACCTTGTGGGCAAAAGGGGCTTAAGCGAGTGAGATTTAGCCGCAGGAAATTCTCAGAGAAGGAAGCTGAGAGCTGGTGGGAGCAAAATCAAGATAGAGTCTACCGTAAGTATGAGATGGAAGGATATATCAAAACAAGCCAAAAATGGGTCAAGggcta 3230 0.4173 MTMEEESISAIPFDRAVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDEKNLIWYSGQQEKHLRLTAVTKIIQGHGNIRPQRQNQPEKECHSFSLIYSNGERSLDLICKDKAQAASWFVGLRAVIFRSQHPRPLSSLRSCKGVQSCVSSPAGILRRKKNLGLLEDTADFTQVHSLCASPTLSLSERCFSDGLSQASDSFYSMESFLSSTQSVTDIFLPNSPYIDPKSCKKGASACVDTEYEKNSPYQSLMRRPTCSSVGNNHVLKDVMIWGGWTGGTVGNGNDRFVNHHEIHAVLPKLLDSTVMLDVQNIALGGKHAALVTKQGEVFCWGQGKGGRLGHKIDLDVNSPKIVESLNGIHIKGVACGENHTCALTDSGEVYTWGDDGCGAGLVAERTQRSRWIPHKLSGLDGISILNIACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNLHSISQPKEVESLRGLRVRSVACGSWHTAAIVDVMVDRFKYNTSTGKLFTWGDGDEGRLGHADNGRKLLPTCVSQLVDYDFIQVSCGRTLTIALTNLGKVFTMGSAVHGQLGNPHAKDKAVTTVEGLLKQEFVKGISSGSYHVALLTSSGSVYTWGKGANGQLGLGDTEDRCSPSFVEALRDRHIESITCGSNFTTAICLHKPISISDQSACNGCKLPFSFTRKKHNCYNCGLLFCHGCSSRKVTNASLAPNKSRAFRVCDQCFDKQQARMHSVNASKSSNYNAQQLLKHQKMFPDLREDRGETTVTQGPLLSISQSCYRKSMPSGRKEWRNQQESQHHLEDTYSVLGGVPQWGQVPCPASFRINCTENSVGHISLSKNKSASATYHNLDSVVSNTANSEKNLVKSDKMLMEEVQRLRARSKRLEEQCQLRDHELQECHKKIEESWCLARDEAAKCKAAKDVITALALRIHTISEKTSAGQEAKVVTDECLPDLLPIHADIHIPKDGKVSSLAGSPIVFSGRLKSKLGRSMFLKSDTSVEDPHCTRAESQQDSIDGSADEWVEEFESGVYITLTKLPCGQKGLKRVRFSRRKFSEKEAESWWEQNQDRVYRKYEMEGYIKTSQKWVKG 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01379 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Bva13g01379 1076 PANTHER F12P19.9 PROTEIN 16 1064 - -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 324 IPR000408 -
Bva13g01379 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 360 388 - -
Bva13g01379 1076 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Bva13g01379 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 1007 1061 IPR013591 -
Bva13g01379 1076 Gene3D - 16 133 IPR011993 -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 482 IPR000408 -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Bva13g01379 1076 Pfam FYVE zinc finger 656 715 IPR000306 GO:0046872
Bva13g01379 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 597 646 IPR000408 -
Bva13g01379 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 431 479 IPR000408 -
Bva13g01379 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 494 542 IPR000408 -
Bva13g01379 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 469 479 IPR000408 -
Bva13g01379 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 722 IPR013083 -
Bva13g01379 1076 SUPERFAMILY PH domain-like 16 126 - -
Bva13g01379 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1064 - -
Bva13g01379 1076 Gene3D - 489 660 IPR009091 -
Bva13g01379 1076 SUPERFAMILY RCC1/BLIP-II 266 650 IPR009091 -
Bva13g01379 1076 SMART fyve_4 648 717 IPR000306 GO:0046872
Bva13g01379 1076 CDD PH_PLC_plant-like 15 127 - -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Bva13g01379 1076 Coils Coil 855 875 - -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Bva13g01379 1076 SUPERFAMILY FYVE/PHD zinc finger 654 730 IPR011011 -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Bva13g01379 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 430 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 327 343 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 417 433 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 267 283 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 433 447 IPR000408 -
Bva13g01379 1076 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Bva13g01379 1076 Gene3D - 391 484 IPR009091 -
Bva13g01379 1076 Gene3D - 235 390 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01379 Bva-Chr13 7222038 7228035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01379 968 1066 Major Intrinsic Protein MIP AT1G31880 33.663 3.20e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01379 - - adu:107481014 1578.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01379 13 7222038 7228035 Bva13g01379 13 7222038 7228035 ECH