Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01353 ATGGTTCTGTCTTGGACAAAAGGAAGAGTTTTTCGCCGTGCCCCCAAAGGGAAAAAGCTCGCCGGCGGTGATTTGGAGGTGGAAATTCTCGTCCCTTCTCATTTCCGGTGCCCGGTGAGTATGGATTTGATGAGGGATCCGGTGACCTTGTCTACTGGGGTTACCTACGACAGGGACAGCATAGAGAAGTGGTTTGAATCTGGGAACCAGACATGTCCGGTTACTAACCTGTTCCTGAACAGCTTCGAGGTAATCCCAAATCATGCCATTCGAAGGATGATTCAAGATTGGTGCGTGGAGCACAAGAATTATGGGATTGAGAGAATTCCCACACCTCGGATCCCGGTGGCGCCGTACCAGGTTTCCGAGACATTTGAGAAGATAATTGCTGCAACCAGAGCTGGAGATGACaacaaatgtcaagaattGGTGGGAAAGATAAAAACTTGGGGGAAAGAGAGTGAGAGGAACAAAAGGTGTATAGTGGAAAATGGAGCTGGTGCTGTGTTAGCTGATGCCTTTGGTTCATTCTCAAGCAATTCAATTGAGAAGAATGCTGCAGTATTAGCGGAAATCTTGGGGGTATTGCCATGGATATCCCCAATTGGAGAAGAGGGAAAATCAAAGCTGGGTTCAGAAGCTTCTCTTCGTTGCATGGTTTGGTTCTTAAATGGTACAGATCTTTCTGCAAAGCAAAACGCTGCCTTGCTGCTCAAGGAAATGCCTGTGAATGCTTTGGCCAAAATTGAAGGAGTTGCTGAAGCTTTGGCAAAGATGATTAGTGACCCAATTGGACTTTCTCCTACCAAGGCTTCTTTGAGAACAATTTTTCGATTGGTTTCATCATCGGCCGACAAAGAGAGAATCAGGCAGAGATTTGTTGaattgggtttggttccattGTTGCTGGAAGCTCTTGTTGATGCAGATAGAGGGGTTTGCGAGAAGGCTTTGGGTGTTTTGGATTGTCTCTGCGATTCCTTAGAAGCCAAGAAACTGGCCAAGGCAAATGCTTTGACCATGCCAGTTATAGTCAAAAAGATTCTAAGGGTTTCAGAATTGGCATCAGAATTTGCAGTTTCTCTTCTTTGGAAGCTCTGTGAGAAGAACGATGAAGGAGTTCTGCTTGAGGCAGTTCAAGTGGGAGCATTTCAGAAGCTCTTGGTTCTGTTGCAGGTGGGTTGTGGTGAGGGCACGAAGGAGAAGGCTACTGAGTTGTTGAAATTGTTGCATGGTTACAAGAGCAAAGCTGAGTGTGTTGATTCATCATTGGATTTGAAGTACCTGAAGAAGCCCTATTG 1301 0.4481 MVLSWTKGRVFRRAPKGKKLAGGDLEVEILVPSHFRCPVSMDLMRDPVTLSTGVTYDRDSIEKWFESGNQTCPVTNLFLNSFEVIPNHAIRRMIQDWCVEHKNYGIERIPTPRIPVAPYQVSETFEKIIAATRAGDDNKCQELVGKIKTWGKESERNKRCIVENGAGAVLADAFGSFSSNSIEKNAAVLAEILGVLPWISPIGEEGKSKLGSEASLRCMVWFLNGTDLSAKQNAALLLKEMPVNALAKIEGVAEALAKMISDPIGLSPTKASLRTIFRLVSSSADKERIRQRFVELGLVPLLLEALVDADRGVCEKALGVLDCLCDSLEAKKLAKANALTMPVIVKKILRVSELASEFAVSLLWKLCEKNDEGVLLEAVQVGAFQKLLVLLQVGCGEGTKEKATELLKLLHGYKSKAECVDSSLDLKYLKKPY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01353 433 SUPERFAMILY ARM repeat 140 410 IPR016024 -
Bva13g01353 433 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Bva13g01353 433 Gene3D - 122 422 IPR011989 -
Bva13g01353 433 SUPERFAMILY RING/U-box 29 107 - -
Bva13g01353 433 CDD RING-Ubox_PUB 35 76 IPR045210 -
Bva13g01353 433 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 433 - -
Bva13g01353 433 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Bva13g01353 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 108 IPR013083 -
Bva13g01353 433 Pfam U-box domain 31 103 IPR003613 GO:0004842|GO:0016567
Bva13g01353 433 PANTHER WDSAM1 PROTEIN 13 433 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01353 Bva-Chr13 7046216 7047770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01353 26 433 U-box Gene Family AT5G37490 49.639 3.59e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01353 - - gmx:100795913 579.711