Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01352 ATGACTAGAAAGAAGGTGAAACTCCAGTTCATAGCCAATGACAGTGCCAGAAAATCCACCTttaagaagaggaagaggggTTTGCTGAAGAAAGTGAGTGAACTCAGCACCCTTTGTGGTGTAGAGGCCTGTGCCTTTGTCTATAGTCCCTATGATCCTGAGCCAGAGATTTGGCCATCTCCAATGGAGGCTCAAAGGGTGCTAACCAGGTTCATCAGAATGCCTGAACAAGAGAAAAGCAAGAAGATGGTGAATCAAGAGATCTTTCTGAGGGAAAGGGTATTTAAGACAAAAGAACATGTGAAGAAGCTGAGGAAGGAGAATAGGGAGAAGGAGCTGAGTCTTCTGATGTACCAGTACCTTTCTACTGGTAGAATCCTGCAACCCATGAGCATGATTGATGTCAATGATCTCCATTGGTTCGTGGGTCAGAATATTAGGGAGATCAACAGCAGGATTGAAGTAATGAAGAGATTAGCTCAGCCGAATGAAAGCCAAGCCGCGGTGGAAGCTCCGGCTCCTGCACCGGCACTGGCACCAGCACCTGTACCTACACCAGCAGTTATGGCGGCAGCAGTGGCACCTGGCATGGTGGGGGCTGGAGAAAGGCTACAGGTGGAACAAGGGCGAGGGTTGGTGTCAAATGTGGGTGCCATGCAAAGTCAGCAGCCATGGTTCATGGATCTGCAGGTCAGTAATGGTGGGGAGGAGATGCTGCCATTTGGAATTGCCAATCACCAAAATCCATTTTGGCCTATGAATTA 764 0.4738 MTRKKVKLQFIANDSARKSTFKKRKRGLLKKVSELSTLCGVEACAFVYSPYDPEPEIWPSPMEAQRVLTRFIRMPEQEKSKKMVNQEIFLRERVFKTKEHVKKLRKENREKELSLLMYQYLSTGRILQPMSMIDVNDLHWFVGQNIREINSRIEVMKRLAQPNESQAAVEAPAPAPALAPAPVPTPAVMAAAVAPGMVGAGERLQVEQGRGLVSNVGAMQSQQPWFMDLQVSNGGEEMLPFGIANHQNPFWPMN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01352 254 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bva13g01352 254 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Bva13g01352 254 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bva13g01352 254 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 177 - -
Bva13g01352 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva13g01352 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bva13g01352 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva13g01352 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva13g01352 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
Bva13g01352 254 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01352 Bva-Chr13 7042873 7043637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01352 1 188 Type I MADS-box Gene Family AT5G48670 46.114 8.72e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva13g01352 SRF-TF 6.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01352 - - gmx:100813231 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01352 13 7042873 7043637 Bva13g01352 13 7042873 7043637 ECH