Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01350 ATGTCTTTCTCCCTCGTCGAAGCCTGCAGAAAGAGAAAACGGAGACCCAAAGTTTTCAAGTTTCACTCTTTCGGTGACCCTGGTTGCCCTATAAACCCTAAAGGACCTTTCCGAGATAACATTCGCCTCTTTCTTCAAGAATGCGTAGAGCTCGAAGATTACTGTGTTCAGGGTATGCCGTTGTGGTGCACTCTCCTTATCCACGAGAAATCGAGCTTCATGTTCCCTCTCTACACTGTTGAAGAGAACGTTTACCAATCTCTGCATCCCTTCTGCGACCATTGCCGGTGTGCAGGTTGGAGTGGCCATTTTGTCTCAAAGAGAAGGTACCATTTCATAATCCCAAATGACGATGGGTGGCATAAACACTTGGGTGATGGCGATCTTGATAATCAGACTCATCTCTTGCACGGGATGATTCACTGCAATGGGTATGGGCATTTGATCTGCATTAATGGGATCGAAGGGGGTTCAAAACTTCTCAGTGGCAGAGAGATCATGGATCTCTGGGACAGAATCTGCACAAACCTTCGAACAAGTAAAATCACAGTTGAAGATTCCTCAAAGAAACGGTCTATGGATCTTCGTTTACTTTATGGAGTTGCTTATGGACATTCCTGGTTTGGTAGGTGGGGTTACAGATTCTGTCGTGGAAGCTTTGGGGTGACAGACAACAATTACAATAAAGCAATTGAAGTGCTTGGTTCTTTGGAGCTAGATAAGCTCATGCAAGATTTCAGTGagaaaaattgtaacaaaGAGATCAAACAAATAACTCGTTACTACAGAGATATGAGTGAAACCCCATTGATCACAGTGAGGGATCTTCTCAGGTTTATGCTCACTGTCAAGTCTCGTACTCCTGCAGCTAAGAAAGTTATCAACTTTCCATCTGGTCCTTTCTCAGTTTGTTGCCCAAAAAATTCAACCAGAAATACTCTGCCAAAGGAAAAAACTGCTAGGTACAAAAAGTTCAGCACAGCAGTGGCCAATATGGATAGCAGGTGGCCTGCAAGGAGATTAGAGTATGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAAGCTGCCAATCCAAGTTCTTCTGGGATGACAAGGCAAGATGTACGAGATGCGGCCAGGCAACATATTGGTGACACAGGTTTGCTGGATAATGTGCTGAAATCACTGAACAATGTGCTTGTTGGAAACTGCGTTGTTTGCCGCACGGTGAACCCGGTAACCAGGATCCTGGAATACACCATTCATGACGTTGAGAATGGGTTTAAAGTCCCAGAAGTCGAGTCTGAGGCAAAGGTCCCTGTAGAGTCCCCATCAAAGCGAACTCAAGTGCCCGGAGTTGATGTTTACAATGACGTAGCTTATCTGTACAAGAATGTGATATTGGATTTTCCAGATACAGGACCAATGGAATGGGCAGTTCAGACAGTTCTTGATAGCAGGCATTTTGTGAAGGAATGGGCATTACATGATGAAATGGAGCAGTTATTGACATTCATTTGCCGCTTGAAACCAAATTTCGATGACACGAGATCTCAATCTGACACAGATATGGCACCAGGAGAGATTGTCTCGGTTCCACTGCATGCAACGGTCAGAGACTTGAAGCAAGCAGCTGAGGCAGCTCTGAGGGACACTTACTGCATTGCAGAGAGGCTTATGGTGACAGATATTGAAGAGTTGGGTAGAGCGAGCGACGAGGAATTACTGTTTGGAGTGCTTCAGTCAGGAATGGAACTTTGTGTGAGGGGAATCAGTATAGATTTGGGTACTCCATTGAAGTATCAAGGTGGTGCTGATAATTGGAAGGTGAGGTGTGAATGTGGTGCTCAAGATGACGATGGGGAACGAATGGTGGCGTGTGACATTTGTGAGGTCTGGCAGCACACTCGCTGCTGTGGCATAGAGGATTCTGAGACAGTGCCACCACTGTTTGTGTGCTCAGGGTGCTGTGACTCACTGGTGCCTCCCAGGATTGATTGTCCCTTGACAATGGATTATGCTGATATGATGATTCCAACGCCTAGTCACGTGCTGGAGTTTGGTGTATG 2054 0.4542 MSFSLVEACRKRKRRPKVFKFHSFGDPGCPINPKGPFRDNIRLFLQECVELEDYCVQGMPLWCTLLIHEKSSFMFPLYTVEENVYQSLHPFCDHCRCAGWSGHFVSKRRYHFIIPNDDGWHKHLGDGDLDNQTHLLHGMIHCNGYGHLICINGIEGGSKLLSGREIMDLWDRICTNLRTSKITVEDSSKKRSMDLRLLYGVAYGHSWFGRWGYRFCRGSFGVTDNNYNKAIEVLGSLELDKLMQDFSEKNCNKEIKQITRYYRDMSETPLITVRDLLRFMLTVKSRTPAAKKVINFPSGPFSVCCPKNSTRNTLPKEKTARYKKFSTAVANMDSRWPARRLEYAAQVIVDALKENKAANPSSSGMTRQDVRDAARQHIGDTGLLDNVLKSLNNVLVGNCVVCRTVNPVTRILEYTIHDVENGFKVPEVESEAKVPVESPSKRTQVPGVDVYNDVAYLYKNVILDFPDTGPMEWAVQTVLDSRHFVKEWALHDEMEQLLTFICRLKPNFDDTRSQSDTDMAPGEIVSVPLHATVRDLKQAAEAALRDTYCIAERLMVTDIEELGRASDEELLFGVLQSGMELCVRGISIDLGTPLKYQGGADNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIEDSETVPPLFVCSGCCDSLVPPRIDCPLTMDYADMMIPTPSHVLEFGV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01350 684 ProSitePatterns Zinc finger PHD-type signature. 607 651 IPR019786 -
Bva13g01350 684 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 657 - -
Bva13g01350 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 655 IPR013083 -
Bva13g01350 684 SUPERFAMILY FYVE/PHD zinc finger 595 655 IPR011011 -
Bva13g01350 684 SMART PHD_3 606 652 IPR001965 -
Bva13g01350 684 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 10 657 - -
Bva13g01350 684 CDD PHD_MMD1_like 607 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01350 Bva-Chr13 7036775 7039271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01350 10 657 PHD Transcription Factor Family AT5G22260 32.471 1.10e-120 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01350 - - mtr:MTR_5g077750 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01350 13 7036775 7039271 Bva13g01350 13 7036775 7039271 ECH