Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01327 ATGGGAAGACAACCTTGTTGTGACAAAGTGGGTTTAAAGAAGGGGCCATGGACAGCAGAAGAGGATAAGAAACTGATCAACTTCATACTCATCAATGGCCAATGTTGCTGGAGAGCTGTGCCTAAGCTTGCAGGGCTCTTGAGGTGTGGGAAAAGTTGCAGACTTAGATGGACAAATTACCTAAGACCAGATTTAAAGAGAGGTCTTTTATCAGAATATGAGGAGAAAATGGTCATTGATCTTCATGCCAAACTTGGCAACAGatGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCATTGGAACACCCACATCAAAAAGAAACTCAAGAAAATGGGCATTGATCCTGTCACCCACAAGCCACTCCCTCCTAGTCCAACAGAACAACCTCAAACCccacaaaaacaacaacaacaacaacatcaTCAAAACCAAGTACAAGAAGAACAACCTTTGGCAGTTAACCCCAACTTTGAAACTgaaaataaccaaaacaaagaGGCAGCAGCAGAGAAGTCAGAGAGCTCATATGATCAATCATCAACCATAACTGAATCCAAAGAGGAAGACATAATCATGACACCCCCATTTGACACAATGGAGGTCATAAATAATGGCTTCTGCACTGATGAGGTTCCAATAATTGAACCCCATGAGATTCTAATGCCATGTGCTTCTGCTTATTCATCAgcctcttcatcttcatcttcatctcctTCCTCTTCCAACTTCCTTCAAGACCTGCAACTTCCAGATTTTGTATGGTCATGTGATTACAGTGACAGTAATATAATTGAGAGTAACATGAACAATGGCAGTGTGGGCCTGTGGGATGATGACTTTCTGAGCAGTTTGGATTTACTGCTTAATGAAGATGTTGGTGATGGTGACAGAAAGCAAGTGCTTGATGCTCAACTCAATCATTGCCCAAGAATGGTTATGGATCAAACATCTTGGgcatatggtttattttg 995 0.3829 MGRQPCCDKVGLKKGPWTAEEDKKLINFILINGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAKLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPPSPTEQPQTPQKQQQQQHHQNQVQEEQPLAVNPNFETENNQNKEAAAEKSESSYDQSSTITESKEEDIIMTPPFDTMEVINNGFCTDEVPIIEPHEILMPCASAYSSASSSSSSSPSSSNFLQDLQLPDFVWSCDYSDSNIIESNMNNGSVGLWDDDFLSSLDLLLNEDVGDGDRKQVLDAQLNHCPRMVMDQTSWAYGLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01327 331 MobiDBLite consensus disorder prediction 138 155 - -
Bva13g01327 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva13g01327 331 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Bva13g01327 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva13g01327 331 Gene3D - 71 153 - -
Bva13g01327 331 CDD SANT 16 61 IPR001005 -
Bva13g01327 331 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 303 - -
Bva13g01327 331 MobiDBLite consensus disorder prediction 170 200 - -
Bva13g01327 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva13g01327 331 Gene3D - 11 67 - -
Bva13g01327 331 PANTHER MYB TRANSCRIPTION FACTOR 1 303 - -
Bva13g01327 331 MobiDBLite consensus disorder prediction 122 155 - -
Bva13g01327 331 CDD SANT 74 112 IPR001005 -
Bva13g01327 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva13g01327 331 SMART sant 66 114 IPR001005 -
Bva13g01327 331 SMART sant 13 63 IPR001005 -
Bva13g01327 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva13g01327 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva13g01327 331 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01327 Bva-Chr13 6871443 6873636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01327 1 331 MYB Transcription Factor Family AT5G16600 47.411 6.69e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g01327 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01327 K09422 - gmx:100803624 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01327 13 6871443 6873636 Bva13g01327 13 6871443 6873636 ECH