Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01321 ATGAGTTCTACCTTGGATATGTCACTTGATGATAGAATAAAGAACAGgagtaaaagagagagaggtaGAGGAACTGGCAGGCCCCGTCGTGGCCGCGCTTCAGGTGGGACTCTTAGTGGTGGAAGAATGCCTGGTGCAGCTCGTAGAGGTCTTCTTAATGCTCGGCCATCATCATATGCCATTGCTAAGTCCATTCGCAGACCCCGGCCTTTTCCATGGCAGCATGACTTGTTTGAAGATAGCTTAAGAGCTGCAGGGGTGCAAGGAGTAGAAGTTGGCACGAAGTTGTATGTTTCCAACTTGGACCGTGGAGTTACCAATGAAGACATCAGGGAGCTTTTTGCTGAGATTGGAGACTTGAAGCGGTTTGCAGTTCATTATGACAAGAATGGACATCCAACTGGTTCAGCTGAAGTCGTCTACACCAGAAGAAGTGATGCATTTGCAGCTCTCAAACGATACAATGATGTACTCCTGGATGGAAGGCCCATGAAGATTGAGATACTTGGTGCCAATTTTGATTTACCCTTAACTGCTCGTGTGAATGTTACTGGGGTAAATGGGCGGAGGAAGAGGACAGTTGTAATGACGCCTGGAGGAAGTCGAGGTGGAGGTCCTCCTGTGTCTAATCGTGGTACTGGTTGGGGACGTCGTGGCGGTGCAAGGGGTGGTATTGGAGCAAGGGGTGGTATTGGTGGCGGTGCAAGGGGTGGTATTGGGAGCAGTCGAGGCCGTGGCCGTGGCGGCCGTGTGCCCCGATCTAGGGGTCGTGGTCGTGGTCGTGGTCGTGGGAAGAAGGGCCCTTTTGACAAGGATGAACTCGACAAGGACCTTGAGACCTATCACGCCGAGGCCATGAATACTTCGTA 869 0.5052 MSSTLDMSLDDRIKNRSKRERGRGTGRPRRGRASGGTLSGGRMPGAARRGLLNARPSSYAIAKSIRRPRPFPWQHDLFEDSLRAAGVQGVEVGTKLYVSNLDRGVTNEDIRELFAEIGDLKRFAVHYDKNGHPTGSAEVVYTRRSDAFAALKRYNDVLLDGRPMKIEILGANFDLPLTARVNVTGVNGRRKRTVVMTPGGSRGGGPPVSNRGTGWGRRGGARGGIGARGGIGGGARGGIGSSRGRGRGGRVPRSRGRGRGRGRGKKGPFDKDELDKDLETYHAEAMNTS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01321 289 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 288 - -
Bva13g01321 289 SMART rrm1_1 95 167 IPR000504 GO:0003723
Bva13g01321 289 MobiDBLite consensus disorder prediction 1 47 - -
Bva13g01321 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 171 IPR000504 GO:0003723
Bva13g01321 289 SMART FoP_duplication_2 218 289 IPR025715 -
Bva13g01321 289 PANTHER THO COMPLEX SUBUNIT 4C 1 288 - -
Bva13g01321 289 CDD RRM_THOC4 94 168 - -
Bva13g01321 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Bva13g01321 289 Coils Coil 271 289 - -
Bva13g01321 289 MobiDBLite consensus disorder prediction 263 282 - -
Bva13g01321 289 MobiDBLite consensus disorder prediction 193 289 - -
Bva13g01321 289 MobiDBLite consensus disorder prediction 248 262 - -
Bva13g01321 289 Gene3D - 89 170 IPR012677 -
Bva13g01321 289 SUPERFAMILY RNA-binding domain, RBD 28 168 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01321 Bva-Chr13 6808560 6812371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01321 93 268 Eukaryotic Initiation Factors Gene Family AT2G23350 28.502 1.27e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01321 K12881 - gmx:100801491 321.627