Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01303 aTGGActgctcttcttcttcttctttttcttcctcggAGGGTCTTAACAGCCCGGAGACAAATTTCGACTTTGACAACGCTCGCACGCCCATCGCCGTCCGTCGAGCCCTCCAGCTCATCCAATCGGACGACCCAGGTTCCAAGCTCCAGGCGGCTCGGGACATCCGGCGACTCACAAAGACCTCTAATCGCTGTCGGCGCCAGCTCTCCGAAGCCGTCGGTCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGACCCACGAACCCGCTCTTCTCGCGTTGCTTAATCTCGCCGTCAAAGACGAAAAGAATAAAATCAACATTGTGGAAGCTGGTGCCTTGGAGCCCATAATTAGTTTCCTGAAGTCAGATAATGCAAATCTGATTGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCTTCTATAACCAACAAGCCAATCATTAGTGCTGCTGGTGCAATCCCTCTTCTTGTGGAGATGCTTAGAGATGGAAGCCCACAAGCTAAAGCAGATGCAGTAATGGCTCTTTCTAATTTATCGACACACTCAAACAATCTCAACATCAttctccaaacaaatccaatcCCCTTTATGGTTGATCTGCTTAAAACCTGTAAAAAATCCTCGAAAACAGCAGAGAAATGCTGTTCTTTGATAGAGTCCTTGATGGGTTTTGATGAGGGGAGAACTGCCTTGACATCTGAAGAAGGTGGAGTTCTTGCAGTTGTGGAAGTTCTCGAAAATGGCACTCTCCAAGCGCGGGAGCACGCCGTTGGAGCACTGCTGACAATGTGTGAAAGTGACCGTTGTAAATACAGGGAACCGATTCTCAGAGAAGGTGTAATCCCCGGACTTCTTGAGCTCACCGTTCAAGGAACGCCCAAGTCTCAGTTGAAAGCACGCACCCTTTTGCAGTTGCTGAGAGAATCCCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAACATAGTCTGCAACATCATATCCCGGATAGATGGCGATGATCAATCTGGTAAAGCCAAGAAAATGCTATCTGAGATGGTTCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAGCAAAGAGCTCTTGTATGCACTCCCAGTGATCTGCCTATTAGTAACTGTGCTTCTGAAGTTCCTTCAAAATG 1163 0.4592 MDCSSSSSFSSSEGLNSPETNFDFDNARTPIAVRRALQLIQSDDPGSKLQAARDIRRLTKTSNRCRRQLSEAVGPLVSMLRVDSPETHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSDNANLIEYATASLLTLSASITNKPIISAAGAIPLLVEMLRDGSPQAKADAVMALSNLSTHSNNLNIILQTNPIPFMVDLLKTCKKSSKTAEKCCSLIESLMGFDEGRTALTSEEGGVLAVVEVLENGTLQAREHAVGALLTMCESDRCKYREPILREGVIPGLLELTVQGTPKSQLKARTLLQLLRESPYPRSEIQPDTLENIVCNIISRIDGDDQSGKAKKMLSEMVQVSMEQSLRHLQQRALVCTPSDLPISNCASEVPSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01303 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 71 113 IPR000225 GO:0005515
Bva13g01303 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Bva13g01303 387 SMART arm_5 184 226 IPR000225 GO:0005515
Bva13g01303 387 SMART arm_5 227 268 IPR000225 GO:0005515
Bva13g01303 387 SMART arm_5 61 100 IPR000225 GO:0005515
Bva13g01303 387 SMART arm_5 102 142 IPR000225 GO:0005515
Bva13g01303 387 SMART arm_5 143 183 IPR000225 GO:0005515
Bva13g01303 387 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 19 369 - -
Bva13g01303 387 SUPERFAMILY ARM repeat 36 331 IPR016024 -
Bva13g01303 387 Gene3D - 20 369 IPR011989 -
Bva13g01303 387 PANTHER U BOX DOMAIN-CONTAINING 19 369 - -
Bva13g01303 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Bva13g01303 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Bva13g01303 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Bva13g01303 387 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01303 Bva-Chr13 6676189 6679636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01303 17 310 U-box Gene Family AT2G23140 34.122 7.26e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01303 - - gmx:100780954 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g01303 13 6676189 6679636 Bva13g01303 13 6676189 6679636 ECH