Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva13g01283 | ATGAGTTTTGTTTTTCGAGGGACAAGAACAGATATAGAAACTGGATTTCCAGAATTTATACCTGAGAGGCGTGCCTTGCGAGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTTGTCACAGTTCTCCTGCTATTCATGATATTAAACTCTCACCAGATGTCACCAAACTTTCTGCTATGGCTAGTGCTTGGTGTCTTCTTGATGGCAACAATGTTAAGGATGTATGCAACATGCCAACAGCTTCAAGCGCAGGCCCAAGCTCATGCAGCTGCATCCAGTGGCCTTCTTGGCCACACTGAACTGCGGTTGCATATGCCACCATCCATAGCACTTGCAACCCGAGGGCGTCTACAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGACCTAGATTATGAAACTTTAAGAGCCCTGGATTCGGATAATGTTCCTACTGCACCTTCTATGACCGAGGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGTTTCTGCTCCCCAAATCAGTGGTTCCTTGATGCAACAACCTTCATCTTCTACATCTGCCGAGCAGAAGAAGCAAGATACTCCCAGTGCAGTTGGGAGTATGAAAGCCTCAGATGATGAGCTAACTTGCAGTGTATGCTTGGAGCAAGTCAATGTTGGAGATCTACTTCGTAGCTTGCCTTGCTTGCATCAGTTTCATGCAAATTGCATCGATCCCTGGCTACGGCAACAAGGAACATGCCCTGTTTGTAAATTCAGAGCAGTGTCTGGATGGCATGAAGGTGCGCATAATGAAATGGCTGCTTCGGACATGGTTTG | 830 | 0.4602 | MSFVFRGTRTDIETGFPEFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAASSGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTAPSMTEEEINALPVHKYKVSAPQISGSLMQQPSSSTSAEQKKQDTPSAVGSMKASDDELTCSVCLEQVNVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWHEGAHNEMAASDMV | 276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva13g01283 | 276 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 260 | IPR013083 | - | |
| Bva13g01283 | 276 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
| Bva13g01283 | 276 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
| Bva13g01283 | 276 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 276 | - | - | |
| Bva13g01283 | 276 | MobiDBLite | consensus disorder prediction | 180 | 205 | - | - | |
| Bva13g01283 | 276 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
| Bva13g01283 | 276 | SMART | ring_2 | 214 | 254 | IPR001841 | - | |
| Bva13g01283 | 276 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SDIR1 | 1 | 276 | - | - | |
| Bva13g01283 | 276 | SUPERFAMILY | RING/U-box | 209 | 258 | - | - | |
| Bva13g01283 | 276 | MobiDBLite | consensus disorder prediction | 180 | 203 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva13g01283 | Bva-Chr13 | 6520688 | 6525479 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva13g01283 | 1 | 276 | C3H Transcription Factor Family | AT3G55530 | 77.256 | 9.64e-144 | 402 |