Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01281 ATGTCTACATCTTCGTATTGGTGCTACCGATGCAGTCGATTCGTTAGGGTATGGAGGCAGGACATGGTGGTTTGTCCTGACTGCGACAGTGGATTCGTTGAAGAGATCGTGCATCCAGCCCGGTCCATGCACGTGGATGCGCCGCGGCGGAGGTTCCCGGCTGCGGCGATGTACATGATGGGCCAGCGTCCCAACCCTGATCAGAATTCGCGCCCTCCACTTAGGAGGATCCGCAGGAACGTTGGTGATCGTTCGGCTTTCAACCCTGTCATCGTGCTCCGCGGATCTTCTGATAGGGCAGGTCAAGAGGGTGGAGAGGGTCGGGGCTTTGAGCTTTATTATGATGACGGTGCCGGTTCTGGGCTTAGACCTTTGCCTCCAAGCATGTCGGAATTTCTGTTGGGATCTGGGTTTGATAGGCTTTTGGAGCAGCTTTCCCAGATTGAAATCAACAGTATTGGACGATACGAGCACCCTCCAGCTTCAAAAGCAGCGATTGATTCATTGCCCACGATTGAGATTAACGACGGCCATCTAGCAATGGAAACACACTGTGCAGTTTGCAAAGAAGCTTTCGAATTAGGCACTACAGCTCGGGAAATGCCTTGTAAGCATATTTACCACTCAGAATGCATTCTACCATGGCTTGCTCTTCGCAATTCCTGCCCAGTTTGCCGCCACGAATTGCCAGCTGATACGCAGAGTGTGCCAGCATCAGGGCAATCCCTTACCTGGAACGACGAAGAGAATGTGGGGCTGACAATTTGGAGGCTTCCGGGTGGTGGGTTTGCAGTGGGAAGGTTCTCTGGTGGAAGAAGGGGTGCTGAGAGGGAGCTACCAGTAGTTTACACAGAAATGGATGGTGGATTTAACAATGGCGGTGAACCGAGGAGGATTTCGTGGTCGGCTAGAGGGAATAGAGGGAGGGAGAGTGGTGGATTGCGCAGAATGTTTCGGAACATGTTTGGCTGCTTCACGAGAGAGCCTCAACCTCGGCCTTCTACTTCTAATTCTAATGCAGAAATCAGAACCATGATGAGGAGTTCTTCTCATCAATCCAATAGAAATTCCTCTACACGTGCTCGCAGGACCTGGTCCATGGATGTAAACAGTGGATGGTA 1121 0.5165 MSTSSYWCYRCSRFVRVWRQDMVVCPDCDSGFVEEIVHPARSMHVDAPRRRFPAAAMYMMGQRPNPDQNSRPPLRRIRRNVGDRSAFNPVIVLRGSSDRAGQEGGEGRGFELYYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINSIGRYEHPPASKAAIDSLPTIEINDGHLAMETHCAVCKEAFELGTTAREMPCKHIYHSECILPWLALRNSCPVCRHELPADTQSVPASGQSLTWNDEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSARGNRGRESGGLRRMFRNMFGCFTREPQPRPSTSNSNAEIRTMMRSSSHQSNRNSSTRARRTWSMDVNSGW 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01281 373 MobiDBLite consensus disorder prediction 345 373 - -
Bva13g01281 373 Pfam Ring finger domain 184 226 IPR001841 -
Bva13g01281 373 SUPERFAMILY RING/U-box 165 237 - -
Bva13g01281 373 CDD RING-H2_RNF126_like 185 226 - -
Bva13g01281 373 SMART ring_2 185 225 IPR001841 -
Bva13g01281 373 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Bva13g01281 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 323 - -
Bva13g01281 373 Pfam Protein of unknown function (DUF1117) 251 358 IPR010543 -
Bva13g01281 373 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Bva13g01281 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 232 IPR013083 -
Bva13g01281 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01281 Bva-Chr13 6508388 6510157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01281 124 234 C3H Transcription Factor Family AT5G01980 42.342 2.34e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01281 - K11982 gmx:100807324 551.977