Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01270 ATGGCGAATCGGTGGTGGGCTGGAAATGTGACAATGAGACCAGCAGACCCCATGTCATCTTCTCCATCGCTTCAGCTGAGGAACCCAGAAGATGACCATGGTGGATTGAATCGACTTGGGCAAAGACGAGAGCAAGAGTTCTTGGACAACAGCAATAACTACGCCACACCAAGTAATAGCAGCAACAGCAACACTAACCTAAACACCAACACCACCTCGCAGAGCCAAAACGCCGAAGATGATGATAGCAGAGACAACGAGCGTGAAGGTGATGACCAGAACCCAGGTAGCCACGAAGCTGTTGAGCCTGGTAGCAGCGGTCGCAGGCCCCGAGGCCGTCCACCTGGGTCTAAGAACAAGGCAAAACCACCTGTCGTTATAACCAAGGAGAGCCCCAATGCGCTGCGAAGCCATGTTTTGGAAATCAGCAGCGGCAGCGACGTAGCTGAGAGCGTTGCAACCTTTGCTAACCGCAGGCATCGAGGGGTATCGGTGCTGAGTGGAAGTGGCATTGTAACCAATGTCACTCTTCGGCAACCAGCTGCTCCTGGTGGGGTTATCACACTTCATGGAAGGTTCGAGATATTGTCTTTATCTGGTGCCTTTTTGCCTGCTCCTTCGCCACCTGGTGCCACTGGATTAACAGTATATTTAGCCGGTGGACAAGGGCAGGTTGTTGGTGGAACTGTGGTGGGTTCTCTGGTGGCTTCTGGGCCTGTGATGGTCATTGCAGCTACATTTGCTAATGCTACTTATGAAAGGTTGCCACTTGAAGATGAACCAACTGGCGAGGGAATGCAAGTGCAGCCACAATCAGGGGTGAATTCAGAAACTACTGGGACTTCAGCATCTCAAGGTTTGGGCGAACAAGTTTCAATGCCCATGTATAATTTGCCTCCAAATTTGCTACCAAATGGTCAAATGCCTCATGATGTATTCTGGGCTCCTCCACCTCGCCCTCCTCCCCCCTCTTAttg 977 0.5138 MANRWWAGNVTMRPADPMSSSPSLQLRNPEDDHGGLNRLGQRREQEFLDNSNNYATPSNSSNSNTNLNTNTTSQSQNAEDDDSRDNEREGDDQNPGSHEAVEPGSSGRRPRGRPPGSKNKAKPPVVITKESPNALRSHVLEISSGSDVAESVATFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLEDEPTGEGMQVQPQSGVNSETTGTSASQGLGEQVSMPMYNLPPNLLPNGQMPHDVFWAPPPRPPPPSY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01270 325 MobiDBLite consensus disorder prediction 300 325 - -
Bva13g01270 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 323 - -
Bva13g01270 325 MobiDBLite consensus disorder prediction 311 325 - -
Bva13g01270 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 260 - -
Bva13g01270 325 MobiDBLite consensus disorder prediction 78 96 - -
Bva13g01270 325 MobiDBLite consensus disorder prediction 265 288 - -
Bva13g01270 325 CDD DUF296 136 219 IPR005175 -
Bva13g01270 325 ProSiteProfiles PPC domain profile profile. 132 270 IPR005175 -
Bva13g01270 325 MobiDBLite consensus disorder prediction 46 77 - -
Bva13g01270 325 MobiDBLite consensus disorder prediction 31 45 - -
Bva13g01270 325 MobiDBLite consensus disorder prediction 1 127 - -
Bva13g01270 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Bva13g01270 325 MobiDBLite consensus disorder prediction 258 288 - -
Bva13g01270 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 323 IPR014476 GO:0003680
Bva13g01270 325 Gene3D - 135 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01270 Bva-Chr13 6442516 6444729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01270 1 325 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.709 5.77e-78 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01270 - - jre:108986305 429.098