Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01245 ATGGCTTCTTCGGAAATCAATCACCTTTCTCATCCATGTATATATGGGGACTTTGGTTCTTCATATGCAGAGAGAAAGTCTCGCTTTATGAAATGGTTGAGCAAGTTTTTCAGAACTTGGTCCAATAGAGGAAGGGGAGGTCGTCATCTACAACCGTCTGCAGATGAAAACACTGTTTGGCCTGCTCCACCCAGATCATTgGATGATGGTCCTAGAGCTCAGAAGGATAAAGAGGATCCGGACCATGCCATTGCACTTTCATTTGGTGAAGATTTCAAGGGAGCAAAAGATCATCAAGGATATAGATGGGGGGCAGACAATGATGAAGATTATGCAATGGCACCTCAGGATAGCTTATACCCACCTTCACATCGTCCATATGTCCCTGCACCATTTTATCCCAGTGGATATAGAATATGTGGTGGCTGCAAGCAGGAGATAGTCTACGGTAATTGTTTGGGATGCATGGGTACTTATTTTCATCCGGACTGCTTTTGCTGTCATTCTTGTCATTACCCCATTACAGAACGTGAGTTTTCTTTGTCAGGGAAGAATCCATACCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAGATGTGAAGTTTGCCACCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGTCAcccattttggtctcaaaAATACTGTCCATCACATGAATATGACAATACTGCACGCTGCTGTAGTTGTGAAAGACTGGAGTCTTGGAATGCCAGATACTACAGTTTGGAAGATGGACGGAGTTTATGCTTCGAGTGCATGGAATCTGCTATAATGGATACCGGTGAATGCCAACCTCTTTACCATGCTATCAGAGATTTTTATGAAGGAATGAATATGAGGATCGATCAACAAATTCCCATGCTTCTGGTTCAGAGAGAAGCACTGAATGATGCTATTGTTGGGGAGAAGAACGGTTTCCATCACATGCCAGAGACAAGGGGCTTATGCCTTTCTGAAGAGCAAACTGTCACCAGTATACATAGAAAGCCAAGAATCGGAGGCCACCTCCTACTAGTACTGAGAACTCAACATCAAAAGCTCATCAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTACGGTCTTCCTAGATTACTAACAGGTGCTATCCTTGCCCATGAGTTGATGCATGGCTGGTTACGCCTCAATGGTTTTCACGACCTTATTCCCGAAGTAGAGGAAGGTATCTGCCAGGTTCTGTCTCATCTGTGGCTTGGTTCTGAAGTGAGTCCTAGCATTACAGACATGCCATCAACATCAGCAGcagctttttcttcttcctcctcctcctccgtCGTCTACACATCGTCGAAGAAAGGTCTAAGGTCTAATGTTGAGAATAAACTGGGTGAATTTTTCATGCACCAGATTGCTAATGATTCTTCCCCAGCTTATGGGGGTGGCTTTAGAGCCGCCATTGCAGCTGTCAATAAATATGGTTTACGTACTACTCTCGAGCATATTCGTTTGACTGGTTATCGCTACCTTAATCCTAAAGCAGAGAAAGGTATCTGCTATGTTCTCTCTTATATGTGGCTTGAAAGTGAAATAATgtcctcatcatcatcatcaaagaAAGCTGCAAAACCTGATATTGAAAAGAAGTTGGGTGAATTTTTCTTGCGGCATATTGCTAATGATTATTTCCTCCCTGGTTACGAGGGTAGCTATAGAGCTGCTATTGCAGCTGTCAATAAATATGGTTTGCGTAGTACTCTCGAACATATTCGTTGCACTGGAAATTTACCAACATA 1793 0.4105 MGDFGSSYAERKSRFMKWLSKFFRTWSNRGRGGRHLQPSADENTVWPAPPRSLDDGPRAQKDKEDPDHAIALSFGEDFKGAKDHQGYRWGADNDEDYAMAPQDSLYPPSHRPYVPAPFYPSGYRICGGCKQEIVYGNCLGCMGTYFHPDCFCCHSCHYPITEREFSLSGKNPYHKSCFKELTHPRCEVCHQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLESWNARYYSLEDGRSLCFECMESAIMDTGECQPLYHAIRDFYEGMNMRIDQQIPMLLVQREALNDAIVGEKNGFHHMPETRGLCLSEEQTVTSIHRKPRIGGHLLLVLRTQHQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGFHDLIPEVEEGICQVLSHLWLGSEVSPSITDMPSTSAAAFSSSSSSSVVYTSSKKGLRSNVENKLGEFFMHQIANDSSPAYGGGFRAAIAAVNKYGLRTTLEHIRLTGYRYLNPKAEKGICYVLSYMWLESEIMSSSSSSKKAAKPDIEKKLGEFFLRHIANDYFLPGYEGSYRAAIAAVNKYGLRSTLEHIRCTGNLPT 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01245 583 ProSitePatterns LIM zinc-binding domain signature. 126 160 IPR001781 -
Bva13g01245 583 CDD LIM_DA1 126 178 - -
Bva13g01245 583 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 151 - -
Bva13g01245 583 MobiDBLite consensus disorder prediction 28 64 - -
Bva13g01245 583 Pfam LIM domain 126 179 IPR001781 -
Bva13g01245 583 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 487 582 - -
Bva13g01245 583 SMART lim_4 125 177 IPR001781 -
Bva13g01245 583 PANTHER PROTEIN DA1-RELATED 2 10 491 IPR045218 -
Bva13g01245 583 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 10 491 - -
Bva13g01245 583 ProSiteProfiles LIM domain profile. 124 184 IPR001781 -
Bva13g01245 583 PANTHER PROTEIN DA1-RELATED 2 487 582 IPR045218 -
Bva13g01245 583 Pfam Protein DA1 275 490 IPR022087 -
Bva13g01245 583 Gene3D Cysteine Rich Protein 121 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01245 Bva-Chr13 6297551 6304937 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva13g01245 DA1-like 2.6e-92 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01245 - - gmx:100784976 781.556