Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01244 ATGGAGTCTGGACAAGTAGCAAACGTACGGAACGGAGCGTCGATGGTGGTCGCCGGTGATCGGAGTATTGTGCTCCAAGGTGATTACAAGGAATTAAGAGACGGAACCATTTATCACATTTATGCCcaaaaagtgaaatataattatttctacAACACGTCACGCAATCCCGAAATTCAGGATGGTGGTGCTAGATTTCAGAATAAGGATTATGATGCAAGACCAGCATTTCAGCAAAGCTTAAATCCACCTTCACGTTGTTCAAATGTCCCTAAACCACTTTCTCGCAATGGGAAAAGAATATGTGGTGGCTGCAACAAGGAGATAGTCCACGGTGATTATTTGGGATGCATGGGTACTTATTTTCATCCGGACTGTTTTCGCTGTCATTCTTGTCATTACCCCATTAGAGAACGCGAGTTTTCTTTGCAAGAGAAGAATCCATACCACAAGTCCTGTTTCAAAGAGTTGACCCACCCAAGATGTGAAGTTTGCCACCAATTTATTCCTTTAAATGCTGCTGGTTTGATTGAGTATAGGTGTCACCTATTTTGGTCTCAAAAATACTGTCCATCACATGAATATGACAATACTGCACGCTGCTGTAGTTGCGAAAGGCTGGAGTCTTGGAATGCCAGATACTACAGTTTGGAAGATGGACGGAGTTTATGCTTCGAGTGCATGGAATCTGCTATAATGGATACCGGTGAATGCCAACCTCTTTACCATGCTATCAGAGATTTTTATGAAGGAATGAATATGAGGATCGATCAACAAATTCCCATGCTTCTGGTTCAGAGACAAGCACTGGATGATGCTATTGTTTGGGAGAATAATGGTTTCTATCACATGCCAGAGACAAGGGCCTTATGCCTTTCTGAAGAGCAAACTGTCACCAGTATACATAGAAAGCCAAGAACCGGATTCCACCGCCTACTAGTACTGAGAACTCAACATCAAAAGCTCACCAAAAAATGTGAAGTTACAGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTGCTAACAGGTGTTACCCTTGCCTATGAATTGATGTATGCTTGGTTACGCCTCAAGGGTTATCGCAACCTTGATCCTAAAGTAGAGAAAGGTATCTGCAAGGTTCTGTCTTATATGTGGCTTGAAAGTGAAGTAatgtcatcatcatcatcaaagaAAGGTGCAAAATCTGGTACTGAAAAGAAGTTCGGTGAATTTTTCTTGCACCAGATTTCTAATGAGGGTAGCTATAGAGATGCAGTTGCAGCTGTCAATAAATATGGTTTGCGTAGTACTCTTGATCATATTCGTTGGACTGGGAATTTACCAATATA 1331 0.4072 MESGQVANVRNGASMVVAGDRSIVLQGDYKELRDGTIYHIYAQKVKYNYFYNTSRNPEIQDGGARFQNKDYDARPAFQQSLNPPSRCSNVPKPLSRNGKRICGGCNKEIVHGDYLGCMGTYFHPDCFRCHSCHYPIREREFSLQEKNPYHKSCFKELTHPRCEVCHQFIPLNAAGLIEYRCHLFWSQKYCPSHEYDNTARCCSCERLESWNARYYSLEDGRSLCFECMESAIMDTGECQPLYHAIRDFYEGMNMRIDQQIPMLLVQRQALDDAIVWENNGFYHMPETRALCLSEEQTVTSIHRKPRTGFHRLLVLRTQHQKLTKKCEVTAILVLYGLPRLLTGVTLAYELMYAWLRLKGYRNLDPKVEKGICKVLSYMWLESEVMSSSSSKKGAKSGTEKKFGEFFLHQISNEGSYRDAVAAVNKYGLRSTLDHIRWTGNLPI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01244 443 Gene3D Cysteine Rich Protein 87 159 - -
Bva13g01244 443 Pfam Protein DA1 251 437 IPR022087 -
Bva13g01244 443 PANTHER PROTEIN DA1-RELATED 2 96 443 IPR045218 -
Bva13g01244 443 CDD LIM_DA1 102 154 - -
Bva13g01244 443 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 169 - -
Bva13g01244 443 Pfam LIM domain 102 156 IPR001781 -
Bva13g01244 443 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 96 443 - -
Bva13g01244 443 ProSitePatterns LIM zinc-binding domain signature. 102 136 IPR001781 -
Bva13g01244 443 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Bva13g01244 443 SMART lim_4 101 153 IPR001781 -
Bva13g01244 443 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01244 Bva-Chr13 6292291 6297831 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva13g01244 DA1-like 1.2e-68 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01244 - - pvy:116132480 580.096