Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01240 ATGGAGGGAAGTTTAGACTTCTCCCATGTCCCACAACAGAGAAGGAGGAAAAAGTATCATACTTTTCAGCCCACCATAGCTCCAGCCTTTGAGCCAATTCCACTTCCCCCATCATCATCTACCCCCAACCTCTTCTTTAACAGCTCTGATTCCCGCACGTTACCCTCCATTTCTCGTCCTCTAATCTTTCACAATTTAACAAACAGTTCGTGCGCAATTTCGCATTCCTCTCAGCCGTTCTGTGAACTTCAACTTTCCCATTCAATCTCTGCTTCCCAGGAAGGGCCAAATGAGGACTGGAGAAACTGGGTCCCAATGGGTCCCTTTACGGGTTATGCCTTGATATTGAAGCGATCAAGGTTTCTGAAGCCTGCACAGCAACTTCTTGTAGATTTCTGTGGTGGAAGAGCTTCAGATTCTCCAGCATTGGACTGCTTGAGCGAAAATGGAGTCCATAAGGACCCCATCGCTGGTGATGATCGAACCCTCTATCAATGGAGGGATTCTACTCTGATATCCTTGCTTGAGGAGGTGTACAAGAAATCTATGCTATACTGCCAACAGATGCAGTCAGTGGTAGCATCATTCCAAAAAGTTGCTGGACTTGGAGATGCCACTCCTTATATATCATTTGCCATCAAAACCATTTCCAAGCATTTTAGATGCTTGAAGAATGCCATAAACGATCAGCTTCAGTTTACAAGCAAGGCTCCTGCTGCCAACAATGGTGgggaaaaggaaattctaaGCTTGTCAGCTTTTGAGGCAGAGCTTCATAACCCAAAATCAACTCAGAGCTTACCCTTTGTTCATGTTCATCGGCCTCAAAGAGGACTCCCAGATCAAGCTGTGGCTGCTCTCAGGACGTGGCTCTTTGAACACTTCCTGCACCCTTATCCTTCTGATTCAGAAAAGCATTTGTTGGCTCAACAAACAGGTCTTTCAAGAAGTCAGGTTTCCAATTGGTTCATAAATGCAAGAGTGAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGCTCGAGGAGCAGCCTGCCAAAATGCCTATTCTTGACCCACTGTTAGCAAAACAAGCCCATATGAGAAATTTGCTAGAAACAAGAAGCCTAGAAGCACAAAATGCCCAATCCAAACGCTCAAGACATGAAGCTCCTAGCATTTCTGGTCAGAGTGAAGAACGGGGGATTGCATTGTACACTTACTTTCCAACCAATTCAGACGCTAGAGTCTGTGAACTTAGAACTGCTGGAAGCAATGGATTGTCTTTAGCACTAGATCATTGCCACAATTTGGTTActcatttatg 1307 0.4438 MEGSLDFSHVPQQRRRKKYHTFQPTIAPAFEPIPLPPSSSTPNLFFNSSDSRTLPSISRPLIFHNLTNSSCAISHSSQPFCELQLSHSISASQEGPNEDWRNWVPMGPFTGYALILKRSRFLKPAQQLLVDFCGGRASDSPALDCLSENGVHKDPIAGDDRTLYQWRDSTLISLLEEVYKKSMLYCQQMQSVVASFQKVAGLGDATPYISFAIKTISKHFRCLKNAINDQLQFTSKAPAANNGGEKEILSLSAFEAELHNPKSTQSLPFVHVHRPQRGLPDQAVAALRTWLFEHFLHPYPSDSEKHLLAQQTGLSRSQVSNWFINARVRIWKPMVEEMHMLEEQPAKMPILDPLLAKQAHMRNLLETRSLEAQNAQSKRSRHEAPSISGQSEERGIALYTYFPTNSDARVCELRTAGSNGLSLALDHCHNLVTHL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01240 435 Pfam Associated with HOX 115 227 IPR006563 -
Bva13g01240 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 62 426 - -
Bva13g01240 435 Gene3D - 276 338 - -
Bva13g01240 435 MobiDBLite consensus disorder prediction 371 391 - -
Bva13g01240 435 CDD homeodomain 274 334 IPR001356 GO:0003677
Bva13g01240 435 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Bva13g01240 435 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 62 426 - -
Bva13g01240 435 SMART prehox3 110 229 IPR006563 -
Bva13g01240 435 SMART HOX_1 273 337 IPR001356 GO:0003677
Bva13g01240 435 SUPERFAMILY Homeodomain-like 274 341 IPR009057 -
Bva13g01240 435 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01240 Bva-Chr13 6273857 6276032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01240 101 342 Homeobox Transcription Factor Family AT5G02030 48.289 1.97e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bva13g01240 POX 3.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01240 - - adu:107457744 310.842