Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01225 ATGACCCAAGAGGACCGCGCCGGCTCTCCCTCCGGCGATGCTGCTCACAATGGTGTCGCCAATTCCGTAGTCGCTGGCGGTGACGCAGAGTTGTCGGGACCTGGCGACGGAAACGTTGCCGGTAGAATGAAGGGACCCTGGTCTCCGGAGGAGGACGCGGTTCTCAGTCAATTGGTGAGCAAGTTTGGGGCCAGAAATTGGAGTATGATTGCGCGAGGGATTCCTGGTCGGTCCGGCAAGTCCTGCCGTCTCCGCTGGTGTAATCAGCTCGACCCTTCTGTTAAACGCAAGCCTTTTACTGAGGAAGAGGATCGTATTATAGTTGCAGCCCATGCCATCCATGGAAACAAATGGGCAGCAATTGCAAGGGTTCTTCCAGGGAGAACAGATAATGCTATCAAGAACCATTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGGAGATATGTCCCAGCACATGCTGACGTGATGGAAAATGGCAGCCTTGACAGAACAAAGGCACCCTCTGATGAAACCATGTCAATGGGGGATAACAATTCACTTAAACCTACAGAAGTGAGAAATTTCATGACTGATAATGGAATTAAGCACCCTGAAGAGAATCCTCAAAGAAAAGATATCAGTAGGGTGGAGGAACATCCCACACTTTTTCGACCGGTAGCTCTTGTTAGTGCATTCAGTATTTATAGTCCTGCAAACAAGCCAACAACTGGATCTACAAATATAAAGATGCTCCCAATGCAGGGCCCTTTGGTCCAGCCATCCAAAGCAGAAATAGGAACCTTAAAGCTATTTGATGATGTTGGCTTTGAGGTTGAGCCTATGGTTCCATCACAATGTGGCCATGGTTGCTGTGCAGCAGATTCAAGGGGAAGCCATTCTCCTGGTTCACTATTAGGTCCTGAGTTCGTTGACTATTTGGAGTCCCCTCCTTTCTCAAGTCATGAATTGAACTCTATAGCTACAGATTTGAACAATATTGCTTGGATCAAGAGTGGCCTTGAGAATCATGGTGTCAGGGTAACAGAAAATCCAGCAAACTTTCCAGCATCACAAGGAGCCTCTGCTGCTTCACAATCAGACTTTTCAGACTACATGCACTTTCAAGAAGGACCTGGCAGGTTTTTCGGTGCAATGAAAGAAGTGTTGCCTGCGCAGATGCCTAGACAACTTTTTGCTATGCCAGCAGAAGTTTG 1202 0.48 MTQEDRAGSPSGDAAHNGVANSVVAGGDAELSGPGDGNVAGRMKGPWSPEEDAVLSQLVSKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPSVKRKPFTEEEDRIIVAAHAIHGNKWAAIARVLPGRTDNAIKNHWNSTLKRRCMELGRYVPAHADVMENGSLDRTKAPSDETMSMGDNNSLKPTEVRNFMTDNGIKHPEENPQRKDISRVEEHPTLFRPVALVSAFSIYSPANKPTTGSTNIKMLPMQGPLVQPSKAEIGTLKLFDDVGFEVEPMVPSQCGHGCCAADSRGSHSPGSLLGPEFVDYLESPPFSSHELNSIATDLNNIAWIKSGLENHGVRVTENPANFPASQGASAASQSDFSDYMHFQEGPGRFFGAMKEVLPAQMPRQLFAMPAEV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01225 400 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Bva13g01225 400 MobiDBLite consensus disorder prediction 1 48 - -
Bva13g01225 400 CDD SANT 46 88 IPR001005 -
Bva13g01225 400 PANTHER MYB PROTEIN-RELATED 14 339 - -
Bva13g01225 400 MobiDBLite consensus disorder prediction 168 187 - -
Bva13g01225 400 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Bva13g01225 400 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Bva13g01225 400 Gene3D - 98 144 - -
Bva13g01225 400 SMART sant 43 92 IPR001005 -
Bva13g01225 400 SMART sant 95 143 IPR001005 -
Bva13g01225 400 MobiDBLite consensus disorder prediction 163 187 - -
Bva13g01225 400 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 14 339 - -
Bva13g01225 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Bva13g01225 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 90 IPR017930 -
Bva13g01225 400 Gene3D - 43 95 - -
Bva13g01225 400 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Bva13g01225 400 CDD SANT 98 141 IPR001005 -
Bva13g01225 400 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01225 Bva-Chr13 6113020 6117286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01225 39 345 MYB Transcription Factor Family AT3G55730 49.844 1.76e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva13g01225 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01225 K09422 - gmx:100781228 517.694