Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01183 ATGGCGGCGGGCGACCGCACAGTATTGCAGTTCTCTAGTTCTTCGCAGAGCTTGACCGCCAAGGTTCACCCACTCGTTATTTTTAACATCTGCGACTGCTATGTTCGACGCTCTGACCAAGCGGAGCGTGTCATCGGCACACTACTCGGCTCCATATTGCCTGATGGAACCGTCGATGTCCGCAACTCCTATGCCGTTCCCCACAATGAATCTCTGGACCAGGTTGCTTTAGATATTGAGTACCACCACAATATGTTAATATCACACCAAAAAGTGAACCCAAAGGAAGTCATAGTTGGATGGTATTCAACTGGTCTTGGGGTGACTGGTGGTAGTGCATTGATCCATGAATTTTATTCTCGAGAAGTGCCCAGCCCTATACATTTGACAGTTGATACTGGATTCACAAATGAGGAGACCACTATAAGAGCATACGTCTCAAACAATTTATCTCTTGGAGACCGTCAAATTGCTGCACAGTTTCAAGAAATTCCTTTGGATCTTCGGATGGCTGAAGCAGAACGAATTGGATTTGATGTTCTGAAGGCAACCAATGTTGAGAAAATACCAACTGATTTAGAAGGGATGGAAGCTTCAATGGAACATCTACTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGGGCCAGACAACAACATTGGGAGACTTATATCAGAAGCTGTAGGTTCGCTTCCAAAACTTCCCCCGGCAACTTTTGATAAACTTGTCAACGACAGCTTGCAGgATCATTTGCTCTTGCTATATTTATCTAGCATCACCAGGACACAACTAAGCTTGGCCGAGAAATTGAACACAGCGGCTCAGATTCTGTG 857 0.4492 MAAGDRTVLQFSSSSQSLTAKVHPLVIFNICDCYVRRSDQAERVIGTLLGSILPDGTVDVRNSYAVPHNESLDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPSPIHLTVDTGFTNEETTIRAYVSNNLSLGDRQIAAQFQEIPLDLRMAEAERIGFDVLKATNVEKIPTDLEGMEASMEHLLALIDDIYKYVDDVVEGRVGPDNNIGRLISEAVGSLPKLPPATFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01183 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Bva13g01183 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva13g01183 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva13g01183 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 13 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bva13g01183 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Bva13g01183 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 17 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva13g01183 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva13g01183 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Bva13g01183 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01183 Bva-Chr13 5911039 5914935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01183 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 75.258 1.48e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01183 K03249 - gmx:100811797 477.633