Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01182 atgGAGGCAAAGGAACAAGATGTTTCATTGGGAGCCAACAAGTTCCCGGAGAGGCAGCCGATTGGTACGGCGGCGCAGAGCCAAGATGATGGAAAGGACTACCAGGAACCACCACCGGCGGCGCTGTTCGAGCCATCTGAGCTGACATCGTGGTCGTTTTACAGAGCCGGGATAGCAGAGTTCGTTGCAACTTTTCTGTTCCTGTACATCACGGTCTTGACGGTTATGGGTGTGGTTAGTGCTGATTCCAAGTGCAAAACCGTCGGAATTCAAGGAATTGCTTGGGCTTTCGGTGGTATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCAGGTGGTCACATTAACCCAGCAGTGACATTCGGGCTTTTCCTGGCAAGGAAGCTGTCTCTGACAAGGGCAGTGTTCTACATGGTTATGCAATGTCTTGGTGCCATCTGCGGTGCCGGCGTGGTGAAGGGATTCGAGGGCAAAGCCAAATACGGAAGGTTAAACGGCGGTGCCAATTTTGTTAACTCCGGTTACACTAAAGGTGACGGACTCGGTGCTGAGATCGTCGGAACCTTCATCCTCGTCTACACCGTCTTCTCCGCCACCGATGCCAAGCGCAGCGCCAGAGACTCCCACGTCCCTattttggCTCCCTTGCCAATTGGGTTCGCTGTCTTCTTGGTCCACTTGGCCACCATCCCCATCACCGGCACCGGTATCAACCCGGCTCGGAGTCTCGGTGCAGCCATCATCTTCAACAAGGATCTCGGCTGGGATGAACACTGGATTTTCTGGGTTGGACCATTCATCGGAGCAGCACTGGCAGCTCTGTACCACCAAGTTGTCATCCGAGCCATTCCCTTCAAGAACAACTA 869 0.5386 MEAKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPPPAALFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVVSADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGKAKYGRLNGGANFVNSGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDEHWIFWVGPFIGAALAALYHQVVIRAIPFKNN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01182 289 TIGRFAM MIP: MIP family channel proteins 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Bva13g01182 289 MobiDBLite consensus disorder prediction 1 38 - -
Bva13g01182 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Bva13g01182 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva13g01182 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Bva13g01182 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Bva13g01182 289 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01182 Bva-Chr13 5907240 5908914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01182 1 289 Major Intrinsic Protein MIP AT4G23400 84.083 6.57e-170 470