Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva13g01178 ATGCTAAGCTGTGCCAACTTCTGGAGGAATACACTCAGATCCTGGTTGTGGAAGCTGACAACGTTGGATCAAACCAACTTCAGAATATCCGAAAGGGTCTGCGTGGTGATTCAATGGTTCTCGGGTAAGAACACTATGATGAAGCGCTCTGTTAGGATGCATGCTGAGAAAACCGGCAACCAGGCCTTCCTCAACCTTATTCCCCTCCTTGTGGGCAATGTGGGATTGATTTTCACTAAAGGTGACTTGAAGGAGGTCAGCGAAGAGGTTGCCAAGTACAAGGTTGGAGCTCCTGCCCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTCCCTCCTGGCAACACAGGGCTTGACCCCTCACAGACCTCTTTCTTCCAGGTGCTTAACATCCCCACCAAGATTAACAAGGGTACTGTCGAAATTATTACCCCTGTGGAACTCATTAAGAAGGGTGACAAGGTTGGCTCTTCTGAGGCTGCTTTGCTTGCAAAGCTTGGGATTAGGCCATTCTCATATGGGCTTGTGGTTCGGCAAGTCTATGATAATGGATCAGTGTTTAGCCCTGAGGTGCTTGATCTGACCGAGGATGACCTCATAGAGAAGTTTGCTGCTGGTGTCTCCATGGTCGCTTCACTTTCATTGGCTATCTCATACCCTACCCTTGCAGCTGCCCCACATATGTTTATCAATGCCTACAAGAATCTCCTGGCTGTTGCAGTTGCCACTGAATACTCATTCCCTCAAGCAGATGAGGTTAAGGAGTACCTAAAGGATCCAAGTAAATTTGCCGTTGCTGCCATTGCTGCCCCTGCTGCTGATTCTGGCTCGGCTCCCGCTGCCCCTGCTGCGgaggagaagaaggaagaaccAGCAGAAGAATCTGATGAGGATATGGGTTTTAGCTTATTCGACTA 917 0.4776 MLSCANFWRNTLRSWLWKLTTLDQTNFRISERVCVVIQWFSGKNTMMKRSVRMHAEKTGNQAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVRQVYDNGSVFSPEVLDLTEDDLIEKFAAGVSMVASLSLAISYPTLAAAPHMFINAYKNLLAVAVATEYSFPQADEVKEYLKDPSKFAVAAIAAPAADSGSAPAAPAAEEKKEEPAEESDEDMGFSLFD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva13g01178 305 Gene3D - 99 170 IPR043164 -
Bva13g01178 305 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 40 305 - -
Bva13g01178 305 CDD Ribosomal_P0_L10e 42 170 - -
Bva13g01178 305 Pfam Ribosomal protein L10 39 93 IPR001790 -
Bva13g01178 305 MobiDBLite consensus disorder prediction 273 305 - -
Bva13g01178 305 Gene3D - 25 194 IPR043141 -
Bva13g01178 305 MobiDBLite consensus disorder prediction 290 305 - -
Bva13g01178 305 SUPERFAMILY Ribosomal protein L10-like 38 119 IPR043141 -
Bva13g01178 305 PIRSF L10E 27 305 IPR030670 GO:0042254
Bva13g01178 305 Pfam 60s Acidic ribosomal protein 219 304 - -
Bva13g01178 305 Pfam Insertion domain in 60S ribosomal protein L10P 99 168 IPR040637 -
Bva13g01178 305 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 40 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva13g01178 Bva-Chr13 5883168 5885435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva13g01178 42 304 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 84.791 3.22e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva13g01178 K02941 - vvi:100250067 430.254